Query= MSMg01no446_h21.b1 MSMg01no446_h21.b1 CHROMAT_FILE:
MSMg01no446_h21.b1 PHD_FILE: MSMg01no446_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:02 2005
(522 letters)
>mm_chr4_65623058_65623977
Length = 920
Score = 971 bits (502), Expect = 0.0
Identities = 517/522 (99%), Gaps = 2/522 (0%)
Strand = Plus / Plus
Query: 1 tagctattgtcctgtcaggagatgcatgactcatgtgtctggggtcaagttggtgaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagctattgtcctgtcaggagatgcatgactcatgtgtctggggtcaagttggtgaccat 260
Query: 61 gtgatacttagtacttacacttaataatactcctaatacttaaaaaattgctaaacatac 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gtgatacttagtacttacacttaataatactcctaatactttaaaaattgctaaacatac 320
Query: 121 atgttaatttattatatatttagtattctacaatcatatttttgtcattttttttagtgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atgttaatttattatatatttagtattctacaatcatatttttgtcattttttt-agtgt 379
Query: 181 atacatcatctactgaatttttaaaaggaaatttcctataaaacattatactgcattacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atacatcatctactgaatttttaaaaggaaatttcctataaaacattatactgcattacg 439
Query: 241 tatcagcagtctatctcttacatctcatctttattcagtctcttgattatattgttttct 300
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatcagcagtcta-cacatacatctcatctttattcagtctcttgattatattgttttct 498
Query: 301 cctaagcttcattcaattttctgatagtatgtctactatggccatattagcaacaacata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctaagcttcattcaattttctgatagtatgtctactatggccatattagcaacaacata 558
Query: 361 tattatacaagcaacccagatatataagatgtgaagccacccatcttagtataagtataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tattatacaagcaacccagatatataagatgtgaagccacccatcttagtataagtataa 618
Query: 421 ttatgatatttgcatatgacttagcatgtatcaccattattaagaaatgcatgaccaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttatgatatttgcatatgacttagcatgtatcaccattattaagaaatgcatgaccaaaa 678
Query: 481 ctaccccctaccgctaggccatacctcagggttagaacagag 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctaccccctaccgctaggccatacctcagggttagaacagag 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 920
Length adjustment: 10
Effective length of query: 512
Effective length of database: 910
Effective search space: 465920
Effective search space used: 465920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_h21.g1 MSMg01no446_h21.g1 CHROMAT_FILE:
MSMg01no446_h21.g1 PHD_FILE: MSMg01no446_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:02 2005
(465 letters)
>mm_chr4_65840541_65841405
Length = 865
Score = 861 bits (445), Expect = 0.0
Identities = 460/465 (98%)
Strand = Plus / Minus
Query: 1 tcttagaactcacagcaagggtgtgaattccctgacaagtctggacattaataatcttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tcttagaactcacagcaagggtgtgaattccctgacaagtctggacattaataatcttga 606
Query: 61 tagtcagggtgtgatctctgaggcaagaagcagctacagggaatttttacagagggagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tagtcagggtgtgatctctgaggcaagaagcagctacagggaatttttacagagggagat 546
Query: 121 ccattttgtatagagtgggccttgagatacagtggactcttgtcagatgacaagatatca 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 545 ccattttgtatagagtgggccttgagatacagtggactcctgtcagatgacaagatatca 486
Query: 181 attcaatgtgttaaaaaacagttctctgttaatgtccctgtgacacccctcagtgaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attcaatgtgttaaaaaacagttctctgttaatgtccctgtgacacccctcagtgaaagt 426
Query: 241 cacataaattttatctttgcgtattttgatgtttgttaaattctttcataggcaaagacc 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cacataaataccatctttgcgtattttgatgtttgttaaattctttcataggcaaagacc 366
Query: 301 cccaaataccactttttctcattcatgcctctttactcaggatcactagcctataaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cccaaataccactttttctcattcatgcctctttactcaggatcactagcctataaatcc 306
Query: 361 agaccttcaaactaaggccacccatctctcttccaacaatatttcttatgctggtgtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agaccttcaaactaaggccacccatctctcttccaacaatatttcttatgctggtgtccc 246
Query: 421 tcagacccctcgtcattacagtcttctcatctggcctcactgttt 465
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 245 tcagacccctcatcattacagtcttctcatctggcctcactgttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
