XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCT
ATTTTCCAATTTCTTTTAACATCTATCTTATATAAAATTTGATTCATTTT
AAATTAATATTTTGTAGAGACTTATAAAGAATGTAGGTCTGGGCTCATTT
TATTTCATGGAATCTTTCTAGTGTTCTAAAACAATTTGTTGGAATGACTA
CACTTGTTCTGTTGAAATGCCTATGTTCTTTGTTCTATGACCATTTTACT
TTTGAAATAGGACTATTTCTGAGACCTATAGTCTGATTTACTAATAGCAT
AAACAGGAAGAAATCTGTTTGTATATAGAGAGATTGATTTTTAAGTTGTG
GTGATGATACTTTCTTTAATTAATGTTTTCCTGTCTCTTAACATTTCAAT
CTGTCAATATGCTGTATATTCTTAGTGTGTGAATAGAAGGTCATTCAGAG
TCCAGTTGAGTTCTTGTGGTGTTTAACTGAATTCTACTGCATTTTTACAT
GTGTTTATGTGTATATGAATACACACACACATGCACACACACACACACAC
ATACTCACACACACATACATTCTTTCTCACACATACGCACTCACATCTAA
ATATTTTTTCCTTTTCCGGAAAGGTTTCTAGGTTATGTCTGCTTTTCTCA
CAACAATCTTTTTTAATTCCTCTTAAATCTATTTATCTATCTTACCTTTC
TATCTATTCTATAAAATCTATTTATACTAACCTATTTATTTATTCTATTC
AN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACAACTGGTGCTGGAGAGATAGAGATAGATAAGTAGTTA
AGAGCACTACCTACTCTTCCAGAGATCCTGAGTTCAATTCCTAGCANCAT
ATGGTGGCCCACAACCATTTTGTAATGGGGTNCAATTCCCTAATCAAAGG
GGGCCGGAAAAAAAGTTCGCCTGTCTTTACGNNNAGTTAACAAAACGCGT
TTTTAATCAAATTNATCCCATAAGATTTAGGGGGGGAACCTACACAGGGG
AAATCAATGGCTTTTTTTGACTTTTAAAAATCCGCTTTTGGGTAATTTGG
ACTAACGGACTTTTTTTTTGGGCCCATGTGTTAGCCCGGTTAAAAATTTC
CAAAAAAGGAGCCGGAATCCTTTAAAGGGAATTAAATNTTTTTAAAGAAC
CCGGGGGGTCTTTGGGAACAAAACCCCAATTTTTTTAGGGGAAAAAAGGG
CTCTATTGTGAAAAAATTTTTTCCCCCCCAAAGGGAAAATTTTGGGGGAA
TTTTTTTTAAAAAAAATTGTTAAATTAAAAGGGGTGTCTCTTTTTTTAAA
AAAAAATATAAGAGGGTGTTTTTTTTTTTTACGCGGGGGGGTAAATTATT
ATACCCACTTTTTTTTTCTCTAAAAAAATATTCCTCCCCATACTTTTTTT
CTTCACACAATTCTCTTTCTGGGTGTGCGTCAATTATTTTCCTTTCCATT
TCCTCCTTTTTTATAATGAATACATCTTTTCCTATACTTTTTTTT

Query= MSMg01no446_o24.b1 MSMg01no446_o24.b1 CHROMAT_FILE:
MSMg01no446_o24.b1 PHD_FILE: MSMg01no446_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:36 2005
         (497 letters)



>mm_chr4_26003099_26003994
          Length = 896

 Score =  862 bits (446), Expect = 0.0
 Identities = 481/494 (97%), Gaps = 5/494 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctattttccaatttcttttaacatctatcttatataaaatttgattcattt 64
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattccttctattttgcaatttcttttaacatctagcttatataaaatttgattcattt 264

                                                                       
Query: 65  taaattaatattttgtagagacttataaagaatgtaggtctgggctcattttatttcatg 124
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 taaattaatattttgtagatacttataaaggatgtaggtctgggctcattttatttcatg 324

                                                                       
Query: 125 gaatctttctagtgttctaaaacaatttgttggaatgactacacttgttctgttgaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatctttctagtgttctaaaacaatttgttggaatgactacacttgttctgttgaaatg 384

                                                                       
Query: 185 cctatgttctttgttctatgaccattttacttttgaaataggactatttctgagacctat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 cctatgttctttgttctatgaccattttacttttgaaataggactatttctgggacctat 444

                                                                       
Query: 245 agtctgatttactaatagcataaacaggaagaaatct--gtttgtatatagagagattga 302
           |||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||
Sbjct: 445 agtctgatttactaatagcataaacaggaagaaatcttggt--gtatatagagagattga 502

                                                                       
Query: 303 tttttaagttgtggtgatgatactttctttaattaatgttttcctgtctcttaacatttc 362
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 503 tttttaagttgtggtgatggtactttctttaattaatgtttttctgtctcttaacatttc 562

                                                                       
Query: 363 aatctgtcaatatgctgtatattcttagtgtgtgaatagaaggtcattcagagtccagtt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 563 aatctgtcaatatgctgtatattcttagtgtgtgaatagaaggtcattcagagtc-agtt 621

                                                                       
Query: 423 gagttcttgtggtgtttaactgaattctactgcatttttacatgtgtttatgtgtatatg 482
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gagttgttgtggtgtttaactgaattctactgcatttttacatgtgtttatgtgtatatg 681

                         
Query: 483 aatacacacacaca 496
           ||||||||||||||
Sbjct: 682 aatacacacacaca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)