Query= MSMg01no447_b02.b1 MSMg01no447_b02.b1 CHROMAT_FILE:
MSMg01no447_b02.b1 PHD_FILE: MSMg01no447_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:47 2005
(567 letters)
>mm_chr4_104174694_104175665
Length = 972
Score = 1058 bits (547), Expect = 0.0
Identities = 562/569 (98%), Gaps = 5/569 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttgcgctgccgaaaatgggagcatgcccctatgcttctgcctgctggtgctt 63
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 772 ggaattctttgcgctgctgaaaatgggagcatgcccctgtgcttctgcctgctggtgctt 713
Query: 64 ctttatgtagctagactgcagcacaccagccaactgtagtatcaggaagcagactcccaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctttatgtagctagactgcagcacaccagccaactgtagtatcaggaagcagactcccaa 653
Query: 124 gagaactcaaacctctgaaagagttcttagcctgggaggacacctccaatgctccccggc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gagaactcaaacctctgaaagagttcttagcctgggaggacacctccaatgctccccggc 593
Query: 184 tctagtgtgtatgtgtgtgtgtgcgtgtcttttgcatatggtatatactgtatttggtaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctagtgtgtatgtgtgtgtgtgcgtgtcttttgcatatggtatatactgtatttggtaa 533
Query: 244 ttttttaccttacctccccaagccaacagaacactgg----aaaaaaaaaaagcttccat 299
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 532 ttttttaccttacctccccaagccaacagaacactggaaaaaaaaaaaaaaagcttccat 473
Query: 300 ttttcttttctgtagtttctgctatctgtaattctcattataccacctaaaatagaacca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttttcttttctgtagtttctgctatctgtaattctcattataccacctaaaatagaacca 413
Query: 360 actcaacacacaagatatttattgttttttgttttatcaatgtgacttaactgaagggat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 actcaacacacaagatatttattgttttttgttttatcaatgtgacttaactgaagggat 353
Query: 420 tctagctacatggacactttaataaacaaaagaggaaacctccctgcctgtgtagaaccc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tctagctacatggacactttaataaacaaaagaggaaacctccctgcctgtgtagaaccc 293
Query: 480 cactccgtgatggaatacagctagccaatgaaatacatagtgagggaaaactctgctgct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cactccgtgatggaatacagctagccaatgaaatacatagtgagggaaaactctgctgct 233
Query: 540 ccctgcgcacggagggtggggg-agggga 567
|||||||||||||||||||||| ||||||
Sbjct: 232 ccctgcgcacggagggtggggggagggga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 972
Length adjustment: 10
Effective length of query: 557
Effective length of database: 962
Effective search space: 535834
Effective search space used: 535834
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_b02.g1 MSMg01no447_b02.g1 CHROMAT_FILE:
MSMg01no447_b02.g1 PHD_FILE: MSMg01no447_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:47 2005
(484 letters)
>mm_chr4_104025091_104025974
Length = 884
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Plus
Query: 1 tctgatgaaatgacatttaaactgatcagtacagatgtgcgattagggatttccagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgaaatgacatttaaactgatcagtacagatgtgcgattagggatttccagagaa 260
Query: 61 gttgttggagacgtgggttacaccatctgaagcaacagaacattactcgtcaaggccggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgttggagacgtgggttacaccatctgaagcaacagaacattactcgtcaaggccggt 320
Query: 121 gaaggggcttgtaaaagagcctgaaggccaccgagtcttgtgtgcacagaataagagaat 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gaaggggcttgtaaaagagcctgaaggccactgagtcttgtgtgcacagaataagagaat 380
Query: 181 aaagtatgattattctaagcctttatcgaaatgacacaaacctaagtgtaagggtatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtatgattattctaagcctttatcgaaatgacacaaacctaagtgtaagggtatgtt 440
Query: 241 ctgaacacaaagtgtaaggagatagattatgtcttttaaatagtaccgtgactgatcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaacacaaagtgtaaggagatagattatgtcttttaaatagtaccgtgactgatcttt 500
Query: 301 agagtgtatgttgcagaaaagcaagagagaaacagaaaaccacaatgtactaagtagtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagtgtatgttgcagaaaagcaagagagaaacagaaaaccacaatgtactaagtagtga 560
Query: 361 acggccgtggctcggcaagggtgaatgcaggtatatgaaggaaggttatggtcttgagtg 420
|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 561 acggccatggctcggcaagggtgaaagcaggtatatgaaggaaggttatggccttgagtg 620
Query: 421 acatgctggagaaaggaatgatgggcttggaatgcaactgcttttagagaagtggggtag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatgctggagaaaggaatgatgggcttggaatgcaactgcttttagagaagtggggtag 680
Query: 481 aggg 484
||||
Sbjct: 681 aggg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
