Query= MSMg01no447_b07.b1 MSMg01no447_b07.b1 CHROMAT_FILE:
MSMg01no447_b07.b1 PHD_FILE: MSMg01no447_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:48 2005
(533 letters)
>mm_chr4_36650280_36651212
Length = 933
Score = 948 bits (490), Expect = 0.0
Identities = 520/530 (98%), Gaps = 1/530 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtttaagactcattggtttggttcagataaggttttgcctatgtatctcagac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaattcagtttaagactcattggtttggttcagataaggttttgcctatgtatctcagac 518
Query: 65 aagcataaaacacaatcctcctgcctgagaatctcaagtgttgcaattattgatatgaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aagcataaaacacaatcctcctgcctgagaatctcaagtgttgcaattattgatatgaga 458
Query: 125 cactcagtatagcttatttttctttaagagattaattatatctttacaacactgacattc 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 457 cactcagtatagcttatttttctttaagaaattaattatatctttacaacactgacattc 398
Query: 185 acttattgagataagagttacctgatcatgattataagttaatattaataagcaggcatt 244
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 397 acttattgagataagagttacctgatcatgattataatttaatattaataagtaggcatt 338
Query: 245 ctttttgatcaatataaatatagtttaattaatattttaactgagagagaagagtagata 304
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 337 ctttttgatcaatataaatatagtttaattaatattttaactgatagataagagtagata 278
Query: 305 tatctcacaaattcaatgacaaatgcaatatttctaatggacaaacaataatattaagca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tatctcacaaattcaatgacaaatgcaatatttctaatggacaaacaataatattaagca 218
Query: 365 tgtttagaagtgtgaaaacatttatattcttggttttcaattactaatgatgttttccat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgtttagaagtgtgaaaacatttatattcttggttttcaattactaatgatgttttccat 158
Query: 425 aatataattagttcttaatgtatattgtttgataaaagatattcatagcataaaagggta 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 157 aatataattagttcttaatgtatattgtttgataaaagatattcatagcataaatgggta 98
Query: 485 taaat-ctttaaaatacacagaataaatgtgccatcttgtattattttgt 533
||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 97 taaattctttaaaatactcagaataaatgcaccatcttgtattattttgt 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_b07.g1 MSMg01no447_b07.g1 CHROMAT_FILE:
MSMg01no447_b07.g1 PHD_FILE: MSMg01no447_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:48 2005
(470 letters)
>mm_chr4_36466584_36467453
Length = 870
Score = 797 bits (412), Expect = 0.0
Identities = 454/468 (97%)
Strand = Plus / Plus
Query: 1 aaccacaccagcacttggagatcctttaatccatatcctaaaggatgtagataatgtctg 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aaccacactggcacttggagatcctttaatccatatcctaaaggatgtagataatgtttg 260
Query: 61 agctcccaacagatctttgatatcatctatgtggtacacttacgcaggcaggtggaatat 120
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttctcaacagatctttgatatcatctatgtggtacacttacgcaggcaggtggaatat 320
Query: 121 aaaagtgccagaatcaccactaaatatgataaggtcaaaatccctgcagagagtccttga 180
|||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||
Sbjct: 321 aaaagtgccagaatcaccactaaatacgataagatcaagatcactgcagagagtccttga 380
Query: 181 aaaatgatgtgtgaaagaaaggggtgaattgaaacctaagcttcagtagacacatggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgatgtgtgaaagaaaggggtgaattgaaacctaagcttcagtagacacatggaga 440
Query: 241 cctctgatacaccaggcatacagaatatttgattgtgacagacacagggatagcgatctc 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cctctgatacaccaggtatacagaatatttgattgtgacagacacagggatagtgatctc 500
Query: 301 aagctaagagggaggtcattgagctacatatggccacacaatggagagagatttacctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagctaagagggaggtcattgagctacatatggccacacaatggagagagatttacctga 560
Query: 361 gctcattggagagcgaacctcagcacatgcttccagtactggaatgaaatatagagttca 420
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 561 gctcgttggagagcgaacctcagcacatgcttccagtactggaatgaaatttagagttta 620
Query: 421 atgcattccctgcttggttctctttttctttgattacggtcttctttt 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcattccctgcttggttctctttttctttgattacggtcttctttt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
