BAC Information

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BAC

Clone NameMSMg01-447F23
Chromosome4 (Build37)
Map Location 69,939,058 - 69,939,330
singlet/doubletsinglet
Overlap geneCdk5rap2
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
Downstream geneMegf9, LOC100039565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447F23.T7 (MSMg01no447_f23.b1)MSMg01-447F23.TJ (MSMg01no447_f23.g1)
ACCAG535844AG535845
length859866
length of high quality
(start - end)
273 (52 - 324)86 (81 - 166)
definitionCHROMAT_FILE: MSMg01no447_f23.b1 PHD_FILE: MSMg01no447_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:15 2005CHROMAT_FILE: MSMg01no447_f23.g1 PHD_FILE: MSMg01no447_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAACCTAGTTTCTATAAGGTATTACAATTCAATAATAAT
AAAATACAATGGTTCAATTAAAAATTAGGAAACAGACCCAGATACACATG
TCTCTGGTAGAGAAGGACCAGAACTAACATAAACATGGGAGGACTTTTAG
CATCACCATCCTTCAGACAGATGCAACTGAAATCTCATCAGAACCCATAC
CTCTTCATCAACACTAGGGGAGCTAGAGTCAGAGATGGTACTATATATGG
GTGGTAGGCAGAGGAATTGACAGNCTCTTGTTCTGCTTGGAGGAAGGTAA
ATGGTAGAGGCAGGAAATCTGGCGCTCCCCCAAAGGGGTAAACAGAAGGC
TATCTTGGGGGTACCAACCTTTTTCCCCCCCGAGTACTGTCTCTCCGGGA
GCGGTCCATTATACTTGCTCTTCTTCTTTCTTTCTTCCTCTTTCCGGTTC
CTTGTGCTTCCCTCTCTTTTGCTTCCTTCTTGCTCCTTCCTTCCCTCCGC
CAATCGACTCGTTTTGTCTTCTATATTCTCATCGCCGTTCGCCCATATTT
CTGCCCCCCACCTCACTCCATACTCTTCCTTCATTCCCTTTCTCATGTTT
TTCCTCCTTGCTCCCATCAGTCGCTACTCCCTTCATTCCCTTATACGCTG
CATACATTCTCTTTCTCCCTACCTATCCTCCCCAGCGTTTCCCGCCCTTC
CTTCCTTTTCTCCCTTCCACCCTTAGTCTGTCGTTTATATATGTTCTCCT
GCCCTCCCTAATTCTTACCCATCTCCCCATGCCCTCTATCCCATTTACTC
TCCTTTCCA
AAACCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACAGTCAGCAGGATTATGA
TATTGTTTCCCCCTTTCTGACTTTTGTTACCTTTTTTCTCTCCTGTCTAG
TATAAGGGGGTTGATAGTTTTTTGGGGGGGGGGTCGTCTCGTGGTGTGGT
TTTGCTTGTGTGGTTGGTGGGGTGGGCGCTCGTGGCGTTCGGGTTGTTCG
CGGTCGTTGTTTTCTTGCTCGTGTGGGGTGGGGTGGGGTGGGGTGGGGTT
GGGGCTGTTGGCGTGTGGTGGGTTTTTTTTTTTTGTGGGGGGCGGGTGTG
CGCCTTGGTTGTTTTTTTGTCCGGCGCCGTCTTGGTGTGGGGGGGTCTGT
GGCGCTGTGTGGGTGTTTTTGTGTTGTTTCCCCCTCGGCGTTCCGTGCTT
GCCCCTCCTTTTCTCCGTGCTTCTGCTGTTCGCTCGTGCGTCGTGGCCTT
CTCCTTTGCTTCTGTGGGTTCGTTGGTTTTTTTTGTTTGTTTCCGTGTGT
TCTTCCGTCCCCTTGTCTTTTTGTTCTTGTCGTGTCCGTGTTCTCTCCTC
GTTGTGTCTTTTTTCTTTTTCTTCCCTGCGGTCCTCTGTTGCGTATTCCC
CCTTGTGGTCCGCTATTTTGTTTCTTATGGTGCTGTGCGCCGGCCCGCTT
CTTGCCGTGACCTATTCCTTTCTTTGCTTTTCGCTCCCTGCGACTCGTTC
CTTCCCGGTTGTGCTCGCTCCTCTCTCGTTCCGTTCATTCTTGCTTACTG
TTCCGCGTTCCCCGTTTCTGTTGTTCTTCTTCGCTTTTCGCCTTGTCTTG
CTTTGTTTGGCTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_f23.b1 MSMg01no447_f23.b1 CHROMAT_FILE:
MSMg01no447_f23.b1 PHD_FILE: MSMg01no447_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:15 2005
         (273 letters)



>mm_chr4_69938855_69939531
          Length = 677

 Score =  485 bits (251), Expect = e-142
 Identities = 266/273 (97%), Gaps = 4/273 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaacctagtttctataaggtattacaattcaataataataaaatacaatggtt 63
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaacctagaatatataaggtattacaattcaataataataaaatacaatggtt 263

                                                                       
Query: 64  caattaaaaattaggaaacagacccagatacacatgtctctggtagagaaggaccagaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caattaaaaattaggaaacagacccagatacacatgtctctggtagagaaggaccagaac 323

                                                                       
Query: 124 taacataaacatgggaggacttttagcatcaccatccttcagacagatgcaactgaaatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacataaacatgggaggacttttagcatcaccatccttcagacagatgcaactgaaatc 383

                                                                       
Query: 184 tcatcagaacccat----acctcttcatcaacactaggggagctagagtcagagatggta 239
           ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcatcagaacccatccatacctcttcatcaacactaggggagctagagtcagagatggta 443

                                            
Query: 240 ctatatatgggtggtaggcagaggaattgacag 272
           |||||||||||||||||||||||||||||||||
Sbjct: 444 ctatatatgggtggtaggcagaggaattgacag 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 677
Length adjustment: 9
Effective length of query: 264
Effective length of database: 668
Effective search space:   176352
Effective search space used:   176352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)