Query= MSMg01no448_e18.b1 MSMg01no448_e18.b1 CHROMAT_FILE:
MSMg01no448_e18.b1 PHD_FILE: MSMg01no448_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:32 2005
(431 letters)
>mm_chr4_46839864_46840694
Length = 831
Score = 710 bits (367), Expect = 0.0
Identities = 412/427 (96%), Gaps = 2/427 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcttttattacaaaaaaaggtacctccacggcttaccccaggtgggttgtaaa 64
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctttaaaaaaaaaaaaaggtacctccacggcttaccccaggtgggttgtaaa 264
Query: 65 tttaaaagtaagatcattcgtgccaggtgtgaggggcagtggtcactatcagggatatga 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaaagtaagatcattcgcgccaggtgtgaggggcagtggtcactatcagggatatga 324
Query: 125 tcaaagagaggataagacagcat-gcttccggttcagttactgcagggcaagccacagta 183
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 325 tcaaagagaggataagacag-ataacttcgggttcagttactgcagggcaagccacagta 383
Query: 184 atgccattgacctaaacccaagaggtgtggtctctctgcaggaacaagctagcctgcacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 atgccattgacctaaacccaagaggtgtggtctctctgcaggaacaagctaacctgcacc 443
Query: 244 ccatgaaaccccaaagggatgcatagaagcctctggtgggagagatcttttcactactcc 303
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtgaaaccccaaagggatgcgcagaagcctctggtgggagagatcttttcactactcc 503
Query: 304 cgggaaggagcagctgtggcagcttggtaactccccagagagggccagaggcagctgttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgggaaggagcagctgtggcagcttggtaactccccagagagggccagaggcagctgttc 563
Query: 364 acaggctgggcacagcaaattgtgtgatatgctgggttctggggcaggctgccaagccaa 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 acaggctgggcacagcaaattgtgtgatatgctgggttctggggcaggccgccaagccaa 623
Query: 424 cctgggg 430
|||||||
Sbjct: 624 cctgggg 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_e18.g1 MSMg01no448_e18.g1 CHROMAT_FILE:
MSMg01no448_e18.g1 PHD_FILE: MSMg01no448_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:32 2005
(242 letters)
>mm_chr4_47011541_47012182
Length = 642
Score = 418 bits (216), Expect = e-121
Identities = 234/242 (96%), Gaps = 4/242 (1%)
Strand = Plus / Minus
Query: 1 acgatcagtggtggggtcagaaaggagcaggcacgctgtagactacctgtcatagtgtac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 431 acgatcagtggtggggtcagaaaggagcaggcacgctatagactacctgtcgtagtgtac 372
Query: 61 gaagttagacactggagggtgtggggagagacgctggttgtaattctggaagctttgaag 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaagctagacactggagggtgtggggagagacgctggttgtaattctggaagctttgaag 312
Query: 121 ctgcagtttaacagcctataatatcgggcctgagagtacgtgtcccatggtaactgggag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 311 ctgcagtttaacagcctataatatcgggcctgagagtatgtgtcccatggtaactgggag 252
Query: 181 ccccagaattttttgagctgggagtagcactaagctttggacaggtgtatgtatgaggac 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 251 ccccagaattttttgagctgggagtagcactaagctttggacagg----tgtatgaggac 196
Query: 241 ta 242
||
Sbjct: 195 ta 194
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
