Query= MSMg01no449_f08.b1 MSMg01no449_f08.b1 CHROMAT_FILE:
MSMg01no449_f08.b1 PHD_FILE: MSMg01no449_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:56 2005
(507 letters)
>mm_chr4_65300147_65301053
Length = 907
Score = 853 bits (441), Expect = 0.0
Identities = 479/495 (96%), Gaps = 6/495 (1%)
Strand = Plus / Plus
Query: 19 actccccactctagaac------aaccatccctgaccctgtattaatttacaagtgatgt 72
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 213 actccccactctagaacaatttgaaccatccctgaccctgtatcaatttacaagtgatgt 272
Query: 73 tagtaaaatctcaattacatttcctctacctctgaatacgtatgtgggatcactgtgatc 132
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 273 tagtaaaatctcaattatatttcctctacctctgaatatgtatgtgggatcactgtgatc 332
Query: 133 taaatgggtagaggagtcagttggatgaggaaaataattagttgttccaactcagtacta 192
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 333 taaatgggtagaggagtcagttggatgaggaaaatgattagttgttccaactcggtacta 392
Query: 193 gacatatctatccaccaatttattatcttatatagactatacaatcactctgcttgcaaa 252
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 393 gacacatctatccaccaatttattatcttatatagactatacaaccactctgcttgcaaa 452
Query: 253 tatggaaactgtctcacagagtagacccatttgcttatgatcatacagctgacccaaact 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tatggaaactgtctcacagagtagacccatttgcttatgatcatacagctgacccaaact 512
Query: 313 atgcctgctgggtctagaatggccttggtagggtcagaataacttggctcctgtcgctgg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atgcctgctgggtctagaatggccttggtagggtcagaataacttggctcctgtcgctgg 572
Query: 373 gacagggcaagttaatgactccttgataatcagagataacaggaatctaggaggctaagg 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aacagggcaagttaatgactccttgataatcagagataacaggaatctaggaggctaagg 632
Query: 433 tccggctaatgttttaacaaaatggtaaacactgggaccttcagaacaacccttaagtct 492
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tccagataatgttttaacaaaatggtaaacactgggaccttcagaacaacccttaagtct 692
Query: 493 gtgaaaaagaactct 507
|||||||||||||||
Sbjct: 693 gtgaaaaagaactct 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_f08.g1 MSMg01no449_f08.g1 CHROMAT_FILE:
MSMg01no449_f08.g1 PHD_FILE: MSMg01no449_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:56 2005
(286 letters)
>mm_chr4_65431012_65431697
Length = 686
Score = 482 bits (249), Expect = e-140
Identities = 258/263 (98%), Gaps = 4/263 (1%)
Strand = Plus / Minus
Query: 1 caggtgtgatttatttggaattagcttccatgtcagaactacatatctccatctgtattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 caggtgtgatttatttggaattagcttccatgtcagaactacatatctccatctgtattt 347
Query: 61 ttaaggagcatcccctatctccttctcctgaaggacaacaagctctacagcttgataacc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 346 ttaaggagcatcccctatctccttctcctgaaggacaacaagctctatagcttgataacc 287
Query: 121 atatataattgttttcctggtgccagaaataaaaatgtatgactagaggtgttggtcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atatataattgttttcctggtgccagaaataaaaatgtatgactagaggtgttggtcagt 227
Query: 181 tgtggaatccctgagcccagtcttgaatagatagatagatagatagatagatagatagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tgtggaatccctgagcccagtcttgaatagatagatagatagatagatagatagatagat 167
Query: 241 agatatgatgatagatagataga 263
||||| ||||||||||||||
Sbjct: 166 agata----gatagatagataga 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
