BAC Information

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BAC

Clone NameMSMg01-449P23
Chromosome4 (Build37)
Map Location 119,486,586 - 119,487,009
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449P23.T7 (MSMg01no449_p23.b1)MSMg01-449P23.TJ (MSMg01no449_p23.g1)
ACCAG537834AG537835
length780781
length of high quality
(start - end)		424 (55 - 478)422 (86 - 507)
definitionCHROMAT_FILE: MSMg01no449_p23.b1 PHD_FILE: MSMg01no449_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:46 2005CHROMAT_FILE: MSMg01no449_p23.g1 PHD_FILE: MSMg01no449_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACA
GGATCCGCGGAATTCCTGCTGGATTCCGGAATAAATTCAGCCCGCAGACA
CAGAATCTAATCAGCAGCTGCTTTCTGAATCCAGAGCCAACCCATGCCCC
GCTTGTCTTTTCCACTAGGAGTCCAGACCTTTTTTTTTTTTTTAAGGGGT
TTTAACCTTTTAAAGATACAGTACACCAATTATCACTTGAATAGCATGGC
TGGGAATACTGAAAGAAGGCAGGCAGCACCAGGCCTATTGCCACACAGGG
CAAATAGCAGGCAGTAACAATGTTCATTGACATCCATATATCTGCACACA
TGGATAATACATTACATGGTGGGAGAAACATATGCAAATACAGGATATAT
GCGAAGCACATGTTTGTTGCATGATGGGCTTCCCAATGATGAATAGCACT
GCACATGAACACTTCTAAACATTCATGTTTAATAGGTCAGACTCTCGGGA
GACTTTTCAAAACAGGGGTCACCCCTCTGGGGCCCCTTATTGCTCCCGAA
GGGCCCAAAAGCCACTGCTGAAAGGCAGGAATTGTCTACTGAAGCTCACC
CCCCCCCTCCCGCTTAATCCCTAAAAAGGGTCCCCTGGCTGGGCCCGCCC
CGCCCCGGTCCTGTTTTGTTTAGTAATTATCACTATATGTTTTGTGTTTT
TCATCATCCTTATTTCTATGTCCTCACTTTTTTTATCTCCAGTTCAATAC
AGCTCTATTATTCTCCCCTCTCTCTTCTTG

CTAATTTTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTGTTAACTGG
GCCCCAAGTCTCAGAGATGACTATGTCAGAGGCCTATGACTATGTCAGAG
GGGAACAGTCTGATGCTATTTTTCTGCCAAATAGAAATGGTAATAAACTG
CCCTTGAAGTTCTTGCATATCTGTATGGTTCTTTATACCCACAGGTAAGC
GAATCTCTCCCCTTCCTCAGAGAAACTTTTATTTCTCGGTATATGGTGAT
TAATACAGAGACCTATAATTGGTCACTGTACAGAGAATGAGAGAATATAG
AGGACTCTAGATAAGACATCTTTATCAGATTTGCCATGCCAAGGCCCAGG
GATCATCACAGAAGACGGGATAAAGATTATAAGAAGCAGAGGGAATTGAT
ATCTGCAGCAAAACAATATTTGCCAGACAAGACAGAACAGTTACACACAT
AAACTCACAACAACTGGAACTGCATTGCCAAGACCTGCCCCAGATCAAGC
CAGCTAAAACCTCAGCATGGGATCTTGGAGGGGTTCATGTAGTCCCCCCC
CCCCCCGGAAGAACAATTGTGAGCTATTGGTACCGGGGAAAAGAAAATCA
ATTTTTCTTTGGGAATGGTGCCCCCCGAAAATTTACCCCCTGCCCCCGAA
ATATTCCCTTCCCTCGGGGGATAAAAACCAAATTATGGGATTTCTGGTGT
ACTGGCCTCTTCCCCCACCTTTCAAGAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_p23.b1 MSMg01no449_p23.b1 CHROMAT_FILE:
MSMg01no449_p23.b1 PHD_FILE: MSMg01no449_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:46 2005
         (424 letters)



>mm_chr4_119486381_119487209
          Length = 829

 Score =  777 bits (402), Expect = 0.0
 Identities = 417/424 (98%), Gaps = 5/424 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctgctggattc-cggaataaattcagcccgcagacacagaatctaatcagcagc 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaattcctgctggaaacacggaataaattcagcccgcagacacagaatctaatcagcagc 570

                                                                       
Query: 65  tgctttctgaatccagagccaacccatgccccgcttgtcttttccactaggagtccagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgctttctgaatccagagccaacccatgccccgcttgtcttttccactaggagtccagac 510

                                                                       
Query: 125 c----ttttttttttttttaaggggttttaaccttttaaagatacagtacaccaattatc 180
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cttttttttttttttttttaaggggttttaaccttttaaagatacagtacaccaattatc 450

                                                                       
Query: 181 acttgaatagcatggctgggaatactgaaagaaggcaggcagcaccaggcctattgccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acttgaatagcatggctgggaatactgaaagaaggcaggcagcaccaggcctattgccac 390

                                                                       
Query: 241 acagggcaaatagcaggcagtaacaatgttcattgacatccatatatctgcacacatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acagggcaaatagcaggcagtaacaatgttcattgacatccatatatctgcacacatgga 330

                                                                       
Query: 301 taatacattacatggtgggagaaacatatgcaaatacaggatatatgcgaagcacatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taatacattacatggtgggagaaacatatgcaaatacaggatatatgcgaagcacatgtt 270

                                                                       
Query: 361 tgttgcatgatgggcttcccaatgatgaatagcactgcacatgaacacttctaaacattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgttgcatgatgggcttcccaatgatgaatagcactgcacatgaacacttctaaacattc 210

               
Query: 421 atgt 424
           ||||
Sbjct: 209 atgt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 829
Length adjustment: 9
Effective length of query: 415
Effective length of database: 820
Effective search space:   340300
Effective search space used:   340300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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