Query= MSMg01no450_c03.b1 MSMg01no450_c03.b1 CHROMAT_FILE:
MSMg01no450_c03.b1 PHD_FILE: MSMg01no450_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:57 2005
(598 letters)
>mm_chr4_64131645_64132642
Length = 998
Score = 1094 bits (566), Expect = 0.0
Identities = 577/581 (99%)
Strand = Plus / Minus
Query: 1 tttgaaaggatatgcttgtttgtttctaagttaatattaaataaatggttcttctggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tttgaaaggatatgcttgtttgtttctaagttaatattaaataaatggttcttctggagc 522
Query: 61 ctaccatggttggatatagttcaccctatagttgtctcataggtagagaaatatatagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctaccatggttggatatagttcaccctatagttgtctcataggtagagaaatatatagtc 462
Query: 121 aattatatgaataaaacaaaaacacatgcttgtcaaatctatttgatatgccaaacaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aattatatgaataaaacaaaaacacatgcttgtcaaatctatttgatatgccaaacaatt 402
Query: 181 tcagaaaaaaattaatttttaatcatcaaattatcaaaactcacagatgtggaacttgag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccagaaaaaaattaatttttaatcatcaaattatcaaaactcacagatgtggaacttgag 342
Query: 241 ctctatattgttagaacctgcacaagaccacataggaaatcagtggaacattcaacatta 300
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctctatactggtagaacctgcacaagaccacataggaaatcagtggaacattcaacatta 282
Query: 301 tgacctctggtgcaatactatttctgagatctgtgcagtcataatggctctctcaataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgacctctggtgcaatactatttctgagatctgtgcagtcataatggctctctcaataga 222
Query: 361 atgaagaaattaaatctgtttagggccaggcaagaggaacaacaaatgtgtttagaacgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgaagaaattaaatctgtttagggccaggcaagaggaacaacaaatgtgtttagaacgt 162
Query: 421 atggaatgtagcccaatagttagcacaatcacaatcagtatttctcaaagaggaattcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atggaatgtagcccaatagttagcacaatcacaatcagtatttctcaaagaggaattcct 102
Query: 481 caaggatgacatgtcccaaggacttcatgctgttatggagttttgatctgattgttgcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 caaggatgacatgtcccaaggacttcatgctgttatggagttttgatctgattgttgcct 42
Query: 541 ttacattcctcttagtctaagaattgtataanaattccaaa 581
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 41 ttacattcctcttagtctaagaattgtataaaaattccaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_c03.g1 MSMg01no450_c03.g1 CHROMAT_FILE:
MSMg01no450_c03.g1 PHD_FILE: MSMg01no450_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:57 2005
(486 letters)
>mm_chr4_63931005_63931891
Length = 887
Score = 795 bits (411), Expect = 0.0
Identities = 470/493 (95%), Gaps = 7/493 (1%)
Strand = Plus / Plus
Query: 1 cactggagcttcaggctgcctgaatcaccctctgagggtcacatgcccacagagtgaggt 60
||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 195 cactggagcttcaggctgcctgaatcaccatctgagggtcacgtgcccacagactgaggt 254
Query: 61 tctctgcccctaattctggcctccttgagctcaggagaaggcacttatctttccatccat 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 255 tctctgcccctaattctggcctccttgagctcaggagaaagcacttatctttccatccat 314
Query: 121 aaacacaggtcagaaggatttgataacacaaacagtgttttactgaacagtccttgtgtg 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 315 aaacacaggtcagaaggatttgataacacaaatagtgttttactgaacagtccttgtgtg 374
Query: 181 tggcaagctttacatccattaatttatgaattcttcataaccacatgatagagaccacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tggcaagctttacatccattaatttatgaattcttcataaccacatgatagagaccacta 434
Query: 241 atattctcctggattta------cagaagaggctcctgagattcagacaaaaagcaattt 294
||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 435 atattctcctggaattagtggtccaggagaggctcctgagattcagacaaaaagcaattt 494
Query: 295 gactaaggttatgaaatcatatagagcttcaaaagcaggtggtctgagttgactcttatg 354
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 gattaaggttatgaaatcatatagagcttcaaaagcaggtggtctgacctgactcttaaa 554
Query: 355 tttggctcttaacactcagctctctctttt-ggacctgctgagaattattacttcttttc 413
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 tttggctcttaacactcagcgctctctttttggacctgctgagaattattacttcttttc 614
Query: 414 attgaatgttccccatctcagtgctggagggtttgctccaagatgagaacatggtggcac 473
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 615 attgaatgtcccccctctcagtgctggagggtttgctccaagatgagaacatggtggccc 674
Query: 474 attgactgagtag 486
|||||||||||||
Sbjct: 675 attgactgagtag 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
