CTTCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGATC
CGCGGAATTCCACTTTTCAAGTTTCAAAATGGTACCAAATTGAGTTCTAG
GTTAATTATAGTAACAACTTCTGTCCTGTTTGGTAGGAAGTTACTATTTT
TTATTGAAACATGGATGAATTTGAAGTCTATGGAAATAAGTATTGATATT
GAGCTCCTAATACCAGTTTTCACTTCCATAACTCGAAATACCCAGATCAT
CTGATAAAGTTATACTGACACATATCCCTGAAGGCATGAGAAGTCCTTCC
TAGGAAATGATATGTGACCCAGTTCTAATTATTTTTAAATCCCTTGGAAG
CTTTCCTTTGTATTCATACAAAAAGCAATAGGAGACCGACAAGCTTTAAA
AACCTCATTTATTTTTTTAGAATAATAGGTATCAGAAACTACTTACTATT
TCAGAAAGTTTGGGTTGGGTTTTTCTTTTAATACATATGAATGTATTGAG
AATGTTGTAAAAACATAATGTGAGCAAAATAAAAGAGCAAAGACATTATC
TTTGACTGCGAGAATATAAAGTTGATATACTGTTTTCCTATATTATAGTC
TCTTGGTGTATGAAACTGGAAAAGTTAATGAGTGTTATGTCATAGATGGC
TCCACTTGCTATGCCTAAAAATTCACACCTGTCAAAATACATGCCTGAAC
TCCCTACAGTTTTCTAGGAAACCTAATGGAA

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATAGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TAAAAACAACCCTGAGATTCCACCTCACACCAGGCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATCTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGT
GGATATTAACCCCCAACCTAGGATACCCCAGATATAAGATATAATTTTGC
TTAACCCATGAAACTCAAGAAAAATGAAAACTGAAATGTGGGGCCTATGC
CCCTTCTTTGAATTTGGGAAAG

Query= MSMg01no450_e20.b1 MSMg01no450_e20.b1 CHROMAT_FILE:
MSMg01no450_e20.b1 PHD_FILE: MSMg01no450_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:10 2005
         (524 letters)



>mm_chr4_18761717_18762639
          Length = 923

 Score =  944 bits (488), Expect = 0.0
 Identities = 515/524 (98%), Gaps = 1/524 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaaaatggtaccaaattgagttctaggttaattatagtaacaacttctgtcctgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 723 tttcaaaatggtaccaaattgagttctaggttaattatagtaacaacgtctgtcctgttt 664

                                                                       
Query: 61  ggtaggaagttactattttttattgaaacatggatgaatttgaagtctatggaaataagt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggaaggaagttactattttttattgaaacatggatgaatttgaagtctatggaaataagt 604

                                                                       
Query: 121 attgatattgagctcctaataccagttttcacttccataactcgaaatacccagatcatc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 603 attgatattgagcttctaataccagttttcacttccataactcgaaatatccagatcatc 544

                                                                       
Query: 181 tgataaagttatactgacacatatccctgaaggcatgagaagtccttcctaggaaatgat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 543 tgataaagttatactgacacatatccctgaaagcatgagaagtccttcctaggaaatgat 484

                                                                       
Query: 241 atgtgacccagttctaattatttttaaatcccttggaagctttcctttgtattcatacaa 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 483 atgtgacccagttctaattatttttaaatcccttggaagttttcctttgtattcatacaa 424

                                                                       
Query: 301 aaagcaataggagaccgacaagctttaaaaacctcatttatttttttagaataataggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaagcaataggagaccgacaagctttaaaaacctcatttatttttttagaataataggta 364

                                                                       
Query: 361 tcagaaactacttactatttcagaaagtttgggttgggtttttcttttaatacatatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcagaaactacttactatttcagaaagtttgggttgggtttttcttttaatacatatgaa 304

                                                                       
Query: 421 tgtattgagaatgttgtaaaaacataatgtgagcaaaataaaagagcaaagacattatct 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 303 tgtattgagaatgttgtaaaaacataatgtgagcaaaattaaagagcaaagacattatct 244

                                                       
Query: 481 ttgactgcgagaatataaagttgatatactgttttcctatatta 524
           ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 243 ttgactgtgagaatataaagttgatatactgttt-cctatatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 923
Length adjustment: 10
Effective length of query: 514
Effective length of database: 913
Effective search space:   469282
Effective search space used:   469282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)