BAC Information

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BAC

Clone NameMSMg01-450K04
Chromosome4 (Build37)
Map Location 120,403,385 - 120,403,740
singlet/doubletsinglet
Overlap geneKcnq4
Upstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4
Downstream geneNfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450K04.T7 (MSMg01no450_k04.b1)MSMg01-450K04.TJ (MSMg01no450_k04.g1)
ACCAG538317AG538318
length764749
length of high quality
(start - end)
240 (79 - 318)356 (82 - 437)
definitionCHROMAT_FILE: MSMg01no450_k04.b1 PHD_FILE: MSMg01no450_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:38 2005CHROMAT_FILE: MSMg01no450_k04.g1 PHD_FILE: MSMg01no450_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCGGTACCGAGCGCGG
NAANCANAGAGTTTCTANTACTGCCGCAGGAATGGNGAGATTAAAGGTGT
TACCAAGACCAGCTGGAGCCCTCATTTATTATTTATTTAGGTTTTGTGTG
TGTGCGAGAGAGAGGTGCGGGCAGGGGAGGGCGGTAGAGAAGGTTTCTCT
GTGCAGCTCTGGCTGTCCTGGAACTCCCTCTGTAAACCAGACTTGCCTCT
TTTTTTTAGATCGACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGACC
TGTGCCATCACTGCCTTTTTTTTTTTTCTGCACNCAAACNCCGCACTACC
CCGACGTCTTTTTCTGTCCCGCCACAAGGAAAACCCTTGCATCTTCAGCT
GCTTTTATGCCTGCCCCTTATGCTTACGTTCTACCGAGCGAACCTTGCTG
AATCTCCTTAGCTTTGCCTTGCCTAGTTTTGCCTATCCTCGCGTCCTGTC
ATAGAACCTCATTCTACTGCACCGCCTTGCCTCACCTATGCGCTCCTTGC
CTTATTGTTACTTTTCCACCCTCCCCCCCTGGCCCCTCGTCCTTGTCTCT
CCTCTCCCTTCCTCTCCCCTCCCCCCCTCTCCCTGCTCTCGTCCCCTGCT
CCCGCTTTTCTTCTTTTTTCTCTTCCGCCGCCCCCCTCCCTCTTTCCCCC
CTTCTCCCTTTTTCCCTTCCCTTCCCTTCTCGCCCCCCCCCTTCCTCCTT
TCCCTTCCCCGCCN
TGCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTTGACTGGTGGACCT
ATGGCACATCATCTACCCCTATCTAGGACTCAGTTTCTCCCTCTCTCTAA
CAGGATCAGTGATCCCGGATGCTGCAGCCTGGAGGAAGGGGTCTTCTGGC
ATGAAGCCTGAGCAAAGCTTGGGTTCACCTGGGGACACAGAAGGCTGACA
CCAGGCGGTCTCCTCGGGAGAGGAAAATGTTCTTAGGGGAAGCTCCTTAG
GGACCCCCTCTCCCGGTGTTTTTTTTGGCCCAGGCCGGCTTTCTACCACA
AGAAATTCTACCGGTTCTAAGGTGCGAGCCACCAGACCCCAGATCCCGGC
CTGGGCGAGGCATAGTGGAAGGGGCGTGGTTTGTGGGCGGGGCAGTATGT
TGCGGGGCTTTGCCATTGCAAACTCCAGGAGTGTCGGCTCCTGTTATCTC
CCCGCGGTCTCCTTGTCCGGTCGTCTTATTTTTCGTTTCCAAATTAACAA
CTGAATATGTTGCGTCCTGACTGGCGATCAGCGCTTCATGCGCTATAGTG
TGAAGGTGTTGCCGCGTCTCCGAATTCGTATTCCCGTAAGTGTGATTATT
ATTATTGTATTTTTTCTCCCCCTCCTATTTCCCCCCGCACCGCCGCTTCT
TCCCCACACTCCTTTTTTCTCCCTTTCCTTTCCATTTCCTTCTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_k04.g1 MSMg01no450_k04.g1 CHROMAT_FILE:
MSMg01no450_k04.g1 PHD_FILE: MSMg01no450_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:38 2005
         (356 letters)



>mm_chr4_120403185_120403940
          Length = 756

 Score =  636 bits (329), Expect = 0.0
 Identities = 349/361 (96%), Gaps = 10/361 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcgttgactggtggacctatggcacatcatctacccctatctaggactcagtttctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcgttgactggtggacctatggcacatcatctacccctatctaggactcagtttctccc 260

                                                                       
Query: 61  tctctctaacaggatcagtgatcccggatgctgcagcctggaggaaggggtcttctggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctctaacaggatcagtgatcccggatgctgcagcctggaggaaggggtcttctggca 320

                                                                       
Query: 121 tgaagcctgagcaaagcttgggttcacctggggacacagaaggctgacaccaggcggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagcctgagcaaagcttgggttcacctggggacacagaaggctgacaccaggcggtct 380

                                                                       
Query: 181 cctcgggagaggaaaatgttcttaggggaagctccttagggaccccctctcccggtg--- 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   
Sbjct: 381 cctcgggagaggaaaatgttcttaggggaagctccttagggaccccctctcccggcgcag 440

                                                                       
Query: 238 --ttttttttggcccaggccggctttctaccacaagaaattctaccggttctaaggtgcg 295
             |||     |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 ccttt-----ggcccaggccggctttctaccacaaggaattctaccggttctaaggtgcg 495

                                                                       
Query: 296 agccaccagaccccagatcccggcctgggcgaggcatagtggaaggggcgtggtttgtgg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agccaccagaccccagatcccggcctgggcgaggcatagtggaaggggcgtggtttgtgg 555

            
Query: 356 g 356
           |
Sbjct: 556 g 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)