BAC Information

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BAC

Clone NameMSMg01-450L02
Chromosome4 (Build37)
Map Location 155,064,746 - 155,065,181
singlet/doubletsinglet
Overlap genenone
Upstream geneB230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2
Downstream geneB930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450L02.T7 (MSMg01no450_l02.b1)MSMg01-450L02.TJ (MSMg01no450_l02.g1)
ACCAG538361AG538362
length795753
length of high quality
(start - end)
39 (69 - 107)442 (78 - 519)
definitionCHROMAT_FILE: MSMg01no450_l02.b1 PHD_FILE: MSMg01no450_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:42 2005CHROMAT_FILE: MSMg01no450_l02.g1 PHD_FILE: MSMg01no450_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATAATTTGGGCGCAAACGAANCCTAATCGCACGGGGGNGNAATCCA
GGGATACTTCACAGGAGAGATTGCTCAGGAACTCTGAGGAGACATGGAAT
GAAATAATTATCTATTAAGTTATGAGCTAGTTGGGGAACAAACCAAAGCT
TATAGTGTAAGCATTTGATTCTATGTAAGAAGTCTCAGAGTTATTTCGAG
GAACTTGGGGGTGGGTGAGAAAACCAAGTTACCACATTATATTTTTCAGA
ATGGAGTCGGACATTTGCAGTAATGTTTAGCCTGTTACCATGCATTTGTG
CGGTTTTTTAGTTCTATGTCTGAGCAGCATAGTTTGTTGTTTTTGTTTGC
TCGTCTTTGTTACTTGTTTTTGTTATTAAGATCTCTATTTATTATCAGCA
TCACTATTATTAGTCATTAATCCCCCTTTCCCCGTTCCCCTTCTCCCACA
CCTTTTTACTTTCCCTTCTCCCTCTTCTTCTCCCCTTTTTTTCCATCTCT
CCGTCTCCCTTTCCGGCCTTTCGTTTTTTTTCCTTCTCCTTTCCCCCCTC
CCCCGATTATCCTTTTTCCGCTTATTGTGCCCCCCCCTTACCGTCCTTCG
TTTTATTGCCCCCCTCCCGTCTTTTTTTCCACCTTCCCTCCTCATCTCCC
CCCTCCCTTTTCTCTTTTTTTCCCCGCCCTACCCTTCTCTTCTTCTTCTC
CCTTGCTCGTTCCCTCTTTTCCTTTCCCTTCCCTCCTTTTCGCTCCCCTT
CACTGTACACCTCTTTTTTCTTTTCTTCTTTTTCTCCTATCCCCT
TCTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCTGAGGCCAAAACACAAGG
TCCTTCCGGGTATTGAGGCTGTTGTGGAGTTTTAGAGTAGGGGCTGCCTA
CCAGGGCCATTTCAATTTCTAGTAGCAGTGACTCCATCTCTCTTGGGAGA
GCCTCTTTCTCCGGTCAGGAGTAGTGTGGGTGGAATGACCTTTCCCTGCT
CAGGGGTTGGCAAGTGAGTCAGGCCAAGCCTGCACATTCAGACTTATGGA
AGCTCATGGAAGGAGTTCATTGTTTCTATATCAGCTGCTGTGGCTCTAGA
GGTACCTGAACAGGTAGCTGGTTAAAAAGGAAACCAAACACAGCCAATGC
CAGAGATCTGGAGTGTGTGCCTCCTCCAACACAGCCAATGCCAGAGATCT
GGCGTGTGTGCCTCGTCCACGTGCCCAGATCTAACCTCAGACGAAGCGAG
CCCATGTGCTGGAGTTCACAGCCCAGAGAGATAGCTAGCACAGCTATATA
TATATATTTTAAGCAGGCTATGAATCATGGGGACTTGACTGAGGATTTTC
ATGGTGTTCTTAGTTTCATATCCTGCATTAGAAGCTGTTCCATTCCAGCT
TACATTGGGGTCCTAGCTATGCAGTGCGGGTATTAAATTTAACCCTGCTC
CTTACCCTTGGGGCATGAGCTAAGGACAGGGTGCGCCCTTATTTTTACTC
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_l02.g1 MSMg01no450_l02.g1 CHROMAT_FILE:
MSMg01no450_l02.g1 PHD_FILE: MSMg01no450_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:42 2005
         (442 letters)



>mm_chr4_155064365_155065206
          Length = 842

 Score =  745 bits (385), Expect = 0.0
 Identities = 426/443 (96%), Gaps = 8/443 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagctgaggccaaaacacaaggtccttccgggtattgaggctgttgtggagttttagag 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 817 atagctgaggccaaaacacaaggtccttccaggtattgaggctgttgtggagttttagag 758

                                                                       
Query: 61  taggggctgcctaccagggccatttcaatttctagtagcagtgactccatctctcttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 taggggctgcctaccagggccatttcaatttctagtagcagtgactccatctctcttggg 698

                                                                       
Query: 121 agagcctctttctccggtcaggagtagtgtgggtggaatgacctttccctgctcaggggt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 697 agagcctctttctccggtcaggagtagtgtgggtggaatgacctttccctgctca----- 643

                                                                       
Query: 181 tggcaagtgagtcaggccaagcctgcacattcagacttatggaagctcatggaaggagtt 240
            |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 -ggcaagtgagtcagcccgagcctgcacattcagacttatggaagctcatggaaggagtt 584

                                                                       
Query: 241 cattgtttctatatcagctgctgtggctctagaggtacctgaacaggtagctggttaaaa 300
           | |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cgttgcctcaatatcagctgctgtggctctagaggtacctgaacaggtagctggttaaaa 524

                                                                       
Query: 301 aggaaaccaaacacagccaatgccagagatctgga-gtgtgtgcctcctccaacacagcc 359
           |||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct: 523 aggaaaccaaacccagcaaatgccagagatct-gacgtgtgtgcctcctccaacacagcc 465

                                                                       
Query: 360 aatgccagagatctggcgtgtgtgcctcgtccacgtgcccagatctaacctcagacgaag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aatgccagagatctggcgtgtgtgcctcgtccacgtgcccagatctaacctcagacgaag 405

                                  
Query: 420 cgagcccatgtgctggagttcac 442
           |||||||||||||||||||||||
Sbjct: 404 cgagcccatgtgctggagttcac 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)