NTCTTTCTCTTTNNTCCTATXXXXXXXXXXXXXXXXXXXXGAACCTCCAC
CTTTTTTTCCCTCCGCGGAAAAAAGAAAGAAAGAGGGGGAGAAAAATATT
TCTCCCGCGGGCTCGCGGAGCTTCCCGGCGGTTGTTCGCTCTTGTAAAAA
AAAAAAAAATTTTCTGGTTTTTCGCCCCGCCCCCCCCTTTACCCTATTCG
TAAAGTCGCGGGCCGGGTTTCCTTCCTTTTCCTCCTCTGGGNCTTGGACC
CTTTGGAAAGGGGGGGGCCCTTTTTTGGCCCCTTTAAGGTGAAAGTTGGT
TTCCCCCAAGCCAAAGGAATGGTGTTCTGGGCCCTTTCCCCAACACCCCA
AAACCCCCCAAGGGGGCCCCTTTTCCCCCCCTTTTTCCCATGGAGTCTGG
GGGGGGGTTGTTGGGCCACTAATTTCTTCCCTCTTTTGGTGGTGGGGGGA
CGCACCCCCCCCCACCCTCCTTCGTTTTTCGGGTTGTTTAGTGCCTTTTC
TTTTCCACCTCCGCCTTTTACACCCANNNNNNGNGTTTTTTTTCCCCCCT
CCAAAAAAAAAAAAAACCGCGGTGGTTGGGGGGGATTTTTTCGCCCCCCC
CCCCCCTCTGGGGGAGAAAAAAAAACACCCGACGGGGTGTTTTTTTTTCT
TCCCCCAAAAGAAAAAGAAAATATTTTTTTTTTCTTTTTCTCCTCCCCTT
TTTTTTTTGTTAAAGAGAGAAAAAAAAAANCCACCTCCCTTTTTTTTTTT
TCTTTTCGTTTTGTGGTGGCGGGCGCGCCCCCCCTCCTTTTCTATATTAA
AAAAAAAGAAATAAAATTCTCTCTTTTT

NTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCCCCCTTTTTTTGGTC
AGTTATGAGGATACAAGCATTTTTTTTTTTAAGTAAAATAAATCACACAG
AAAAAGCTTTTATGAGACCTGTCTATAAACTGAGAGTAAGTAAGAGAGTG
AGGTAGGGAAGACTGTCTGTCTGACAAGCAGTCATTACTTGGAGAACATT
CATGTCACCAGTCACACACTGAGAGCTGCGGAGCACTGCTCTCCATACTT
CGCTTTTCCGGGAAGAAGTTTGCTAATTATCTCAGTGGAAAAAAAATATT
TCAAATCTTTGGCTCAAAATTCAATCTTCTCCACCTTCATTTTACTTCAG
ATTAATTTGCCAGAGGACAAGTTCCTTAACAAGCTACCCTCCCAAATGTA
AGGAACTGCTACTGGCAGGCAGCCCCTCTGTCAGACCTAAGTACTTCCGC
TTCAAGGAGAGACTCCTTCCGGCTACACAGATAGCAACAGCGCTCCTCTG
CTGGGGATTCTGGCTGGGACCAACACATGCGCTGAGTGTTCCTCCAGCCC
TCCCAGTGCCATGCAGGAAGCGATTGTCCTCACACGGGCCCCACAGCTGC
ATCTGTGTGGTGGTTCTCAGGTGTGCGGCTTGATGAACCTTAATCTGGAT
TTACACATTACAACTACTCCCTCAAGGCAAACATTTTCC

Query= MSMg01no451_d03.g1 MSMg01no451_d03.g1 CHROMAT_FILE:
MSMg01no451_d03.g1 PHD_FILE: MSMg01no451_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:22 2005
         (578 letters)



>mm_chr4_31714253_31715231
          Length = 979

 Score = 1042 bits (539), Expect = 0.0
 Identities = 569/579 (98%), Gaps = 1/579 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacccccctttttttggtcagttatgaggatacaagcatttttttttttaagtaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacccccctttttttggtcagttatgaggatacaagcatttttttttttaagtaaaata 260

                                                                       
Query: 61  aatcacacagaaaaagcttttatgagacctgtctataaactgagagtaagtaagagagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcacacagaaaaagcttttatgagacctgtctataaactgagagtaagtaagagagtg 320

                                                                       
Query: 121 aggtagggaagactgtctgtctgacaagcagtcattacttggagaacattcatgtcacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtagggaagactgtctgtctgacaagcagtcattacttggagaacattcatgtcacca 380

                                                                       
Query: 181 gtcacacactgagagctgcggagcactgctctccatacttcgcttttccgggaagaagtt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcacacacttagagctgcggagcactgctctccatacttcgcttttccgggaagaagtt 440

                                                                       
Query: 241 tgctaattatctcagtgg-aaaaaaaatatttcaaatctttggctcaaaattcaatcttc 299
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tgctaattatctcagtggaaaaaaaaatatttcaaatcttcggctcaaaattcaatcttc 500

                                                                       
Query: 300 tccaccttcattttacttcagattaatttgccagaggacaagttccttaacaagctaccc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaccttcattttacttcagattaatttgccagaggacaagttccttaacaagctaccc 560

                                                                       
Query: 360 tcccaaatgtaaggaactgctactggcaggcagcccctctgtcagacctaagtacttccg 419
           ||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||
Sbjct: 561 tcccaaatgtaaggaactggtactggcaggcagcgcttctatcagacctaagtacttccg 620

                                                                       
Query: 420 cttcaaggagagactccttccggctacacagatagcaacagcgctcctctgctggggatt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 cttcaaggagagactccttccggctacacagatagcaacagcgctcctctgccggggatt 680

                                                                       
Query: 480 ctggctgggaccaacacatgcgctgagtgttcctccagccctcccagtgccatgcaggaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 ctggctgggaccaacacatgcgctgagtgttcctccagccctcccagtgccatgccggaa 740

                                                  
Query: 540 gcgattgtcctcacacgggccccacagctgcatctgtgt 578
           ||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 gcggttgtcctcacacgggccccacagctgcatctgtgt 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)