Query= MSMg01no451_i03.b1 MSMg01no451_i03.b1 CHROMAT_FILE:
MSMg01no451_i03.b1 PHD_FILE: MSMg01no451_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:47 2005
(463 letters)
>mm_chr4_14046262_14047124
Length = 863
Score = 571 bits (295), Expect = e-167
Identities = 328/339 (96%), Gaps = 2/339 (0%)
Strand = Plus / Minus
Query: 126 atatctatctataaatcatatatatatacatatatatatataatttcagtggttagccct 185
|||| ||| |||| || ||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 774 atatatatatatatat-atatatatatatatacatatatataatttcagtggttagccct 716
Query: 186 agtctcaacaggttatatttatgtgtatttgggcacacatacacatatgtatgtatatat 245
|||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 715 agtctcaacaagttatatttatgtgtatttgggcacacatacacatatgtgtatatatat 656
Query: 246 atatatatatacatatatatatatatatatatcattaatatacacatgacatgtaagaaa 305
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atatatatatatatatatatatatatatatatcattaatatacacatgacatgtaagaaa 596
Query: 306 atgaaggaataggagtccatagaattgggtgagagttgggaagaatatggaagaggttgg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atgaaggaataggagtccatagaattgggtgagagttgggaagaatatggaagaggttgg 536
Query: 366 agtttaaggtaagaaacagaagagagtaaattatataagatcctatagcatagataagat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtttaaggtaagaaacagaagagagtaaattatataagatcctatagcatagataagat 476
Query: 426 tatatttaatttaaaaatattt-aaaatagtattgaata 463
|||||||||||||||||||||| ||||||||||||||||
Sbjct: 475 tatatttaatttaaaaatattttaaaatagtattgaata 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 187
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_i03.g1 MSMg01no451_i03.g1 CHROMAT_FILE:
MSMg01no451_i03.g1 PHD_FILE: MSMg01no451_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:47 2005
(637 letters)
>mm_chr4_13850353_13851392
Length = 1040
Score = 1083 bits (560), Expect = 0.0
Identities = 621/644 (96%), Gaps = 11/644 (1%)
Strand = Plus / Plus
Query: 3 tgcttta-agttatgtggtagttgaatgagactggccccccaacagttcatttattggaa 61
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 199 tgctttaca-ttatgtggtagttgaatgagactggctccccaacagttcatttattggaa 257
Query: 62 tgcttagtcaccacttagtggaactatttgggaagggttaggagtgttaggaagtatgac 121
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 258 tgcttagtcaccacttagtggaactacttgggaagggtcaggagtgttaggaagtatgac 317
Query: 122 ctggttagaggaagtatgtcactggtat--gactttgagatttcaaaagcccaagcctag 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 318 ctggttagaggaagtatgtcactggtagcagactttgagatttcaaaagcccaagcctag 377
Query: 180 tgcagcttctgtgcatcaggatataaagctctcagctcctgccccagcaccatgcctgcc 239
||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct: 378 tgcagcttctgtgcatcaggatacaaagcgctcagctcctgctccagcaccatgcctgcc 437
Query: 240 tactccctgtcatgatgatcatggactaaccctctaatactgtaacaaagaacccaatta 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 tactccctgtcatgatgatcatggactaatcctctaatactgtaacaaagaacccaatta 497
Query: 300 aatactttatttattt--tttttataacagttgccccggtagtggtgtcccttaacagca 357
||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 498 aatgctttatttatttattttttataacagttgccctggtagtggtgtcccttaacagca 557
Query: 358 atagagcaataaataagaaatcatatatgatacacaagatgcgttaaataggcatacacc 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 558 atagagcaataaataagaaatcatatatgatacacaagatgagttaaataggcatacacc 617
Query: 418 atgccacactcactagggaagact-gat---tggtattgatctgactttgcttttgctag 473
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 618 atgccacactcactagggaagactagatcactggttttgatctgactttgcttttgctag 677
Query: 474 ttcatgatatagtactttccaataaacaggcatagcaaaaaaaacattctgaaaatagtt 533
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 678 ttcatgatatagtactttccaataaacaggcatagcaaaaaaa-cattctgaaaatagtt 736
Query: 534 ataaggaatgggaactcaagctattcttagtcatcaccttgcaataaataatgcagacat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ataaggaatgggaactcaagctattcttagtcatcaccttgcaataaataatgcagacat 796
Query: 594 tttggcatagttcctttcagtattttaatttcatatttctaaat 637
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tttggcatagttcctttcagtattttaatttcatatttctaaat 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1040
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1030
Effective search space: 645810
Effective search space used: 645810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
