Query= MSMg01no451_m08.b1 MSMg01no451_m08.b1 CHROMAT_FILE:
MSMg01no451_m08.b1 PHD_FILE: MSMg01no451_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:08 2005
(545 letters)
>mm_chr4_116461372_116462315
Length = 944
Score = 1007 bits (521), Expect = 0.0
Identities = 539/547 (98%), Gaps = 6/547 (1%)
Strand = Plus / Minus
Query: 1 atggcttagtggttagggacacttgacttctcgtccagagatcctgagttcaatacccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 atggcttagtggttagggacacttgacttctcgtccagagatcctgagttcaatacccag 844
Query: 61 gaaccacatgttgcatctgtgatctgatgctctcttctggtatagagacacaacactcat 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gaaccacatgttgcatctgt-atctgatgctctcttctggtatagagacacaacactcat 785
Query: 121 agaggtaaaatagatgaataaatcaatcttttaaaaagaatttactcaaccctttcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agaggtaaaatagatgaataaatcaatcttttaaaaagaatttactcaaccctttcaaga 725
Query: 181 tccattatctccatcctctttccaatggagaaaaaaaaaggatgaattctacaagtgagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tccattatctccatcctctttccaatggagaaaaaaaaaggatgaattctacaagtgagt 665
Query: 241 atcttaataatttttagaatatgatactgaacttatcaaggactagagtactaatggtaa 300
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 acct---taatttttagaatatgatactgaacttatcaaggactagagtactaatggtaa 608
Query: 301 aacagac--gagatttaaattgaattttagttcaattatgccttctatgaatggtttcat 358
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aacagacaagagatttaaattgaattttagttcaattatgccttctatgaatggtttcat 548
Query: 359 tttggaaaaacaaatcaacaagtaaggccagttgtgcttcaatttctccatataccaggt 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 547 tttggaaaaacaaatcaacaagtaaggccagttgtgcttcaatttccccatataccaggt 488
Query: 419 aggcatacctgacctgcctaactcacaatctttttgtttgtttaaaagaacatggtgaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aggcatacctgacctgcctaactcacaatctttttgtttgtttaaaagaacatggtgaca 428
Query: 479 gaagcatcaaaaagaaccagtagggggcagcaccgtacagagcatcatcagatctcctat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaagcatcaaaaagaaccagtagggggcagcaccgtacagagcatcatcagatctcctat 368
Query: 539 aggaagc 545
|||||||
Sbjct: 367 aggaagc 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space: 499690
Effective search space used: 499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_m08.g1 MSMg01no451_m08.g1 CHROMAT_FILE:
MSMg01no451_m08.g1 PHD_FILE: MSMg01no451_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:08 2005
(567 letters)
>mm_chr4_116319597_116320563
Length = 967
Score = 1081 bits (559), Expect = 0.0
Identities = 565/567 (99%)
Strand = Plus / Plus
Query: 1 tattgcttagcatacaagcaattttttctgctcaaagaaacctctgagaccatggtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgcttagcatacaagcaattttttctgctcaaagaaacctctgagaccatggtcttt 260
Query: 61 gtaaccgtgcacttcctagggatcaagcaagcagttctatggctaggttcctgggcttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaccgtgcacttcctagggatcaagcaagcagttctatggctaggttcctgggcttga 320
Query: 121 tctcaaacaataacctgtttacttctcccagcacttgagaaggttctgaagttacaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaaacaataacctgtttacttctcccagcacttgagaaggttctgaagttacaaggg 380
Query: 181 tggagactgcacaaaggcctagcttacagggaacatggggaaccttaatcttgcttcttc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tggagactgcacaaaggcctagcttacagggaacacggggaaccttaatcttgcttcttc 440
Query: 241 attccttttgcaggtgaaattgaaaaccagaggagtgggacaaaaggcaggaagaacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attccttttgcaggtgaaattgaaaaccagaggagtgggacaaaaggcaggaagaacaaa 500
Query: 301 gatctgtagagaacttctgggaaggggatggaagggccacagcagaagacagacttccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatctgtagagaacttctgggaaggggatggaagggccacagcagaagacagacttccaa 560
Query: 361 caggacagaaagtaatcctctgcaagtctgctttaagcaacagctttcctgtatagctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggacagaaagtaatcctctgcaagtctgctttaagcaacagctttcctgtatagctag 620
Query: 421 caaagttgcgaacaagacacaaagaacatgatacttacagaagggtgtcctgacttggag 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 caaagttgcgaacaagacacaaagaacatgatacttacagaagggtgtactgacttggag 680
Query: 481 gacctccctcccctctgcctcccaccaacctctggactttcttctcagtcctcttttctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacctccctcccctctgcctcccaccaacctctggactttcttctcagtcctcttttctt 740
Query: 541 tcctttggtcaagtttgtgttttcagt 567
|||||||||||||||||||||||||||
Sbjct: 741 tcctttggtcaagtttgtgttttcagt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
