BAC Information

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BAC

Clone NameMSMg01-452B10
Chromosome4 (Build37)
Map Location 149,049,802 - 149,213,704
singlet/doubletdoublet
Overlap genePik3cd, D4Ertd429e, Slc25a33
Upstream geneLOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1
Downstream geneSpsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452B10.T7 (MSMg01no452_b10.b1)MSMg01-452B10.TJ (MSMg01no452_b10.g1)
ACCAG539425AG539426
length758754
length of high quality
(start - end)		620 (52 - 671)624 (82 - 705)
definitionCHROMAT_FILE: MSMg01no452_b10.b1 PHD_FILE: MSMg01no452_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:33 2005CHROMAT_FILE: MSMg01no452_b10.g1 PHD_FILE: MSMg01no452_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,049,802 - 149,050,418)(149,213,214 - 149,213,704)
sequence
NNNAACTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAGTTTGCTCAACCCTGTGTATGAATCGGCCTCTCCAG
TGGGGTGCTATCGCCTCTGGATGCTCCGCCACCCTGGAACCCTAATGAAC
TCCCTCCCACCCTGTCCACCCAAACCCAGGCCGACAAAGCCCGGTGTTAG
GCGGGGCAGAGCATCTGGCCAGTTAGAGGAGACACAGGGATCCCACAGAC
TCCCGCACAGGTGGGTTTCGTACCCGGTGTCGGTGGCAGGGGCGGGCTCC
GTCTCCCTGGAGACAGTTGCCCGGGGGACACGGCGGGAGGGTCCCGAAGT
GACCGGAGGGCGCCAGCCTCCCGGCGGCCGTGTGCAGCCGGCCGGGCCTG
AGGGCAGGCCCCGCTTGAGGTGGCGGTGCGCGAGCGAGCATCCGCGGAGG
GGCGCGGCTCGGGGCGGGGCTGAACAACGGGCAAGAGAGGGCGGCCGGGT
GGGGCGAGGCGGGGCCCGGTCGGAGGCGGAGCATCCCAGGAATGGGGCGG
GAGCAGAGCCCGCCTCACCATTGCACTGTCCACTCCTCTTAATACCCCAG
GTCTGACACAACGTGGAAGAAGGAATAGCCGCGGGGCGCTAGGAGATAGA
CACATTTTAGCCAGGGGCTAAGGCCGGAGCCTTAAGGGTTCTCCCCATCT
CCCCATCCTGGAGTCTCAGAACTGCCGAGTGATTCAGGATGACAAACGCA
GTCTAGTC

TTTTCACCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACCAGGCCACCCTCC
TCTGTCTGGTACCAATGCGGAGTAAGCCCCATCTGTGTTGGCTTAAAGGC
CTTAATTGCCGTCTCCTACTTAACAACTAACAGTGACCAAAAAAGAAAAC
TACCTCCGAAGAGAAGGTGCCCCACTGTCGGGATGGCAGCTTGCGTCAGT
CTGATTGAGAGTGGTACCCAACAGCTTTCTGCCAGGGCCATGTCTTGGGA
GGCTGTTTTTGTTTTTGTTTTTTTGGAGGAGGGGGTCTTTTATCTTGTTT
TAATCTCTGGCAGGTTTGGGTGTTTGTTTTATGACAGTCTCATGTAACCC
AGGCTGGCCTCAAACTTGCTATGTCTTAGGATAACCTTGAACTCGTGCGC
CTCCTGAGTACAGCTGCCTGGATTTCAAGCATGCACCATCGTGCCTGACC
CCCAGGGAGTCTCTTAATCATGCAGAGTCCCATGCTGTCCTCGAAGGGGC
TGGGGCTGGTTTTTAGACCTAAATTGAAATGGAAATACAGGAGAGAGGTC
AGTTCCTGTTATACTGATATTGAGGATGTTGCCAAACTCAAAAATTGCTC
ATTTTCCCAAAGAAAAGTCAGTTCCCCCTAAGGAGATCATTTGGCTCTCT
GGTAGGAATGGTGAAGGCTAGGCTTTGGCGTTCTGAACTGTGAGACTCAC
CAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_b10.b1 MSMg01no452_b10.b1 CHROMAT_FILE:
MSMg01no452_b10.b1 PHD_FILE: MSMg01no452_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:33 2005
         (620 letters)



>mm_chr4_149049599_149050618
          Length = 1020

 Score = 1154 bits (597), Expect = 0.0
 Identities = 612/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaagtttgctcaaccctgtgtatgaatcggcctctccagtggggtgctatcgc 63
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaagcaggctcaaccctgtgtatgaatcggcctctccagtggggtgctatcgc 263

                                                                       
Query: 64  ctctggatgctccgccaccctggaaccctaatgaactccctcccaccctgtccacccaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctctggatgctccgccaccctggaaccctaatgaactccctcccaccctgtccacccaaa 323

                                                                       
Query: 124 cccaggccgacaaagcccggtgttaggcggggcagagcatctggccagttagaggagaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccaggccgacaaagcccggtgttaggcggggcagagcatctggccagttagaggagaca 383

                                                                       
Query: 184 cagggatcccacagactcccgcacaggtgggtttcgtacccggtgtcggtggcaggggcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagggatcccacagactcccgcacaggtgggtttcgtacccggtgtcggtggcaggggcg 443

                                                                       
Query: 244 ggctccgtctccctggagacagttgcccgggggacacggcgggagggtcccgaagtgacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggctccgtctccctggagacagttgcccgggggacacggcgggagggtcccgaagtgacc 503

                                                                       
Query: 304 ggagggcgccagcctcccggcggccgtgtgcagccggccgggcctgagggcaggccccgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggagggcgccagcctcccggcggccgtgtgcagccggccgggcctgagggcaggccccgc 563

                                                                       
Query: 364 ttgaggtggcggtgcgcgagcgagcatccgcggaggggcgcggctcggggcggggctgaa 423
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 ttgaggtggcggtgcgcgagcgagcatcggcggaggggcgcggctcggggcggggctgaa 623

                                                                       
Query: 424 caacgggcaagagagggcggccgggtggggcgaggcggggcccggtcggaggcggagcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caacgggcaagagagggcggccgggtggggcgaggcggggcccggtcggaggcggagcat 683

                                                                       
Query: 484 cccaggaatggggcgggagcagagcccgcctcaccattgcactgtccactcctcttaata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cccaggaatggggcgggagcagagcccgcctcaccattgcactgtccactcctcttaata 743

                                                                       
Query: 544 ccccaggtctgacacaacgtggaagaaggaatagccgcggggcgctaggagatagacaca 603
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccccaggtctgacacaacgtggcagaaggaatagccgcggggcgctaggagatagacaca 803

                            
Query: 604 ttttagccaggggctaa 620
           |||||||||||||||||
Sbjct: 804 ttttagccaggggctaa 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_b10.g1 MSMg01no452_b10.g1 CHROMAT_FILE:
MSMg01no452_b10.g1 PHD_FILE: MSMg01no452_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:33 2005
         (624 letters)



>mm_chr4_149213214_149214237
          Length = 1024

 Score =  934 bits (483), Expect = 0.0
 Identities = 489/491 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaccaggccaccctcctctgtctggtaccaatgcggagtaagccccatctgtgttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttcaccaggccaccctcctctgtctggtaccaatgcggagtaagccccatctgtgttgg 432

                                                                       
Query: 61  cttaaaggccttaattgccgtctcctacttaacaactaacagtgaccaaaaaagaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttaaaggccttaattgccgtctcctacttaacaactaacagtgaccaaaaaagaaaact 372

                                                                       
Query: 121 acctccgaagagaaggtgccccactgtcgggatggcagcttgcgtcagtctgattgagag 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acctcctaagagaaggtgccccactgtcgggatggcagcttgcgtcagtctgattgagag 312

                                                                       
Query: 181 tggtacccaacagctttctgccagggccatgtcttgggaggctgtttttgtttttgtttt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 tggtacccaacagctttctgccagggccatgtcttgagaggctgtttttgtttttgtttt 252

                                                                       
Query: 241 tttggaggagggggtcttttatcttgttttaatctctggcaggtttgggtgtttgtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttggaggagggggtcttttatcttgttttaatctctggcaggtttgggtgtttgtttta 192

                                                                       
Query: 301 tgacagtctcatgtaacccaggctggcctcaaacttgctatgtcttaggataaccttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgacagtctcatgtaacccaggctggcctcaaacttgctatgtcttaggataaccttgaa 132

                                                                       
Query: 361 ctcgtgcgcctcctgagtacagctgcctggatttcaagcatgcaccatcgtgcctgaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctcgtgcgcctcctgagtacagctgcctggatttcaagcatgcaccatcgtgcctgaccc 72

                                                                       
Query: 421 ccagggagtctcttaatcatgcagagtcccatgctgtcctcgaaggggctggggctggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ccagggagtctcttaatcatgcagagtcccatgctgtcctcgaaggggctggggctggtt 12

                      
Query: 481 tttagacctaa 491
           |||||||||||
Sbjct: 11  tttagacctaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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