Query= MSMg01no452_c07.b1 MSMg01no452_c07.b1 CHROMAT_FILE:
MSMg01no452_c07.b1 PHD_FILE: MSMg01no452_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:37 2005
(433 letters)
>mm_chr4_149918927_149919761
Length = 835
Score = 762 bits (394), Expect = 0.0
Identities = 425/436 (97%), Gaps = 4/436 (0%)
Strand = Plus / Plus
Query: 1 gcaaatgggtgtgcctgtgagcagttctgcttcctcctgccttgcccctccctgccgcgt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaatgggtgtg-ctgtgagcagttctgcttcctcctgccttgcccctccctgccgcgt 259
Query: 61 ctctgtggtttctgttttgtaggattctgagtcagcctcttctcactctaccagactgtg 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctctgtggtttctgttttgtacgattctgagtcagcctcttctcactctaccagactgta 319
Query: 121 ggcc--gtctgagcattctggtttataaccagagcggacagtgtttactgtactacctgt 178
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggccgagtctgagcattctggcttataaccagagcggacagtgtttactgtactacctgt 379
Query: 179 gtttacccaaattccacatttgtgcaagcagctgttttcttaagtattcacccataagaa 238
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 gtttacccagattccacatttgtgcaagcagctgttttcttaagtattcacgcataagaa 439
Query: 239 aaacacctgaaaaggaaatggcataaactgtccctgccccagagcagctattactaggaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaacacctgaaaaggaaatggcataaactgtccctgccccagagcagctattactaggaa 499
Query: 299 gttaaccaaggaagtaaacttgaagcaatttaggattatcaatccaatactctgaatttt 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttaaccaagggagtaaacttgaagcaatttaggattatcaatccaatactctgaatttt 559
Query: 359 atcacctattggaaagaaagggtttaagaaagaaactttcctttgagtccaa-gctagtt 417
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 560 atcacctattggaaagaaagggtttaaaaaagaaactttcctttgagtccaatgctagtt 619
Query: 418 ttgaaagtctactcag 433
||||||||||||||||
Sbjct: 620 ttgaaagtctactcag 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 835
Length adjustment: 9
Effective length of query: 424
Effective length of database: 826
Effective search space: 350224
Effective search space used: 350224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_c07.g1 MSMg01no452_c07.g1 CHROMAT_FILE:
MSMg01no452_c07.g1 PHD_FILE: MSMg01no452_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:37 2005
(569 letters)
>mm_chr4_150155046_150156016
Length = 971
Score = 1029 bits (532), Expect = 0.0
Identities = 561/572 (98%), Gaps = 4/572 (0%)
Strand = Plus / Minus
Query: 1 tgctaaaacccaagggctatacagtctggagacttcttctcagtgccaggtgcctacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgctaaaacccaagggctatacagtctggagacttcttctcagtgccaggtgcctacctg 712
Query: 61 ttatcattcccctcttgggtaactagaaaaacaactgttctttagtgctgaccagagcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttatcattcccctcttgggtaactagaaaaacaactgttctttagtgctgaccagagcgg 652
Query: 121 ggaaaggg---gaaaaaaaaattcttgacccctgtttcctgttggattgtgaaacaaaaa 177
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ggaaagggaacaaaaaaaaaattcttgacccctgtttcctgttggattgtgaaacaaaaa 592
Query: 178 ggtaaatatttaagtcagcgtggcttgcccagaacaatcggccccattgtgacatgcctg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggtaaatatttaagtcagcgtggcttgcccagaacaatcggccccattgtgacatgcctg 532
Query: 238 gtggagtctttgctgaacaaaagggacctcactgtcactggtggcccaggctggggctgc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtggagtctttgctgaacaaaagggacctcactgtcactggtggcccaggctggggctgc 472
Query: 298 tagaggagaggcagacacagcatcatcagagacttgctttggggacagctcagaccatct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tagaggagaggcagacacagcatcatcagagacttgctttggggacagctcagaccatct 412
Query: 358 cagggtcaatgctgagtgtccttgggttgtgcagagtggttttctttaaaggaaagcacg 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 411 cagggtcaatgctgagtgtccttgggttgtgcagagtggttttccttaaaggaaaacacg 352
Query: 418 gtcagagcttttagaagcccagacacaccaacagcctgagcaaagaaacgtggcacttgc 477
||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 351 gtcagcgcttt-agaagcccagacacaccaacagcctgagcaaagaaacgtggctcttgc 293
Query: 478 tcacacagtcaggatcaggttggctcttacgtccagcacttaatgactggccgtggccac 537
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 292 tcacacagtcaggatcaggttggttcttacgtccagcacttaatgactggccgtggcccc 233
Query: 538 caaccccaagctcagaagccttggcagtgaac 569
||||||||||||||||||||||||||||||||
Sbjct: 232 caaccccaagctcagaagccttggcagtgaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 971
Length adjustment: 10
Effective length of query: 559
Effective length of database: 961
Effective search space: 537199
Effective search space used: 537199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
