Query= MSMg01no452_d11.b1 MSMg01no452_d11.b1 CHROMAT_FILE:
MSMg01no452_d11.b1 PHD_FILE: MSMg01no452_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:43 2005
(644 letters)
>mm_chr4_53988990_53990034
Length = 1045
Score = 1201 bits (621), Expect = 0.0
Identities = 639/645 (99%), Gaps = 1/645 (0%)
Strand = Plus / Minus
Query: 1 attataaagaatgcttaaattttccaccgttctaatgaatccttttattgagagtatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 attataaagaatgcttaaattttccaccgttctaatgaatccttttattgagagtatgta 786
Query: 61 gatgtcaggaatcttatcttcttttcattatatgtaaacaacagaagc-tttttttttta 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 785 gatgtcaggaatcttatcttcttttcattatatgtaaacaacagaagcttttttttttta 726
Query: 120 agcatagaacgtttttaaaaatagaatgttcctcaacaaatctctagcctcgaaattgct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agcatagaacgtttttaaaaatagaatgttcctcaacaaatctctagcctcgaaattgct 666
Query: 180 aattttcctgatggcaaagaacaaagactgtcgttctgaaaatgagcccctatgaacaga 239
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 665 aattttcctgatggcaaagaacaaagcctgtcgttctgaaaatgagcccctgtgaacaga 606
Query: 240 accttcagaagtgagttcaggtagcctaagtccaagtctgaggctctctctctccacagt 299
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 605 aacttcagaagtgagttcaggtagcctaagtccaagtccgaggctcgctctctccacagt 546
Query: 300 ttacaacagtgtcatctccagtccaggaatctgaataaatatttgaccatggtgatgggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttacaacagtgtcatctccagtccaggaatctgaataaatatttgaccatggtgatgggg 486
Query: 360 acacatgcagatattttagaggaaacatttccaagtcatctctcatctcctcttggccgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acacatgcagatattttagaggaaacatttccaagtcatctctcatctcctcttggccgg 426
Query: 420 aagtcgagatgagctcgtgtcactgcctatcatcaggccggcttcactcagggcccactt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aagtcgagatgagctcgtgtcactgcctatcatcaggccggcttcactcagggcccactt 366
Query: 480 attgtctgcaaatgttgctataattaaatccaagtggccgctgtgtgttatcatcgtgag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 attgtctgcaaatgttgctataattaaatccaagtggccgctgtgtgttatcatcgtgag 306
Query: 540 ccctctccagccattagccacatttccagggctgcagctctttcaagagaggccactcgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccctctccagccattagccacatttccagggctgcagctctttcaagagaggccactcgc 246
Query: 600 tcttctctctccccttggctgtcccagcaggcttcttctttctgt 644
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcttctctctccccttggctgtcccagcaggcttcttctttctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_d11.g1 MSMg01no452_d11.g1 CHROMAT_FILE:
MSMg01no452_d11.g1 PHD_FILE: MSMg01no452_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:43 2005
(679 letters)
>mm_chr4_53820376_53821454
Length = 1079
Score = 1251 bits (647), Expect = 0.0
Identities = 671/679 (98%)
Strand = Plus / Plus
Query: 1 actcggacaaccggatccttctacagcaaagcttttattgcttacttctcaggaagaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcggacaaccggatccttctacagcaaagcttttattgcttacttctcaggaagaccc 260
Query: 61 cgaacccagaaaatggcgctgcttatatagcccgcagcgtgatgtttcagcacctgaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaacccagaaaatggcgctgcttatatagcccgcagcgtgatgtttcagcacctgaagt 320
Query: 121 ggtgtgacagcacctgattagttgctcgcccatcaccccattactacgtcccgagatggg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ggtgtgacagcacctgattagttgctcgcccatcaccccattacttcgtcccgagatggg 380
Query: 181 cagtgactaggcatgaattcactcttgcacttgcgtataaggcttgtttactagttaggc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 cagtgactaggcatgaattcactcttgcacttgcgcataaggcttgtttactagttaggc 440
Query: 241 gcagtggaagccagcgccatcttataatggcgattgctcatggcatggctctctacagcc 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gcagtggaagccagcgccatcttataatggcgattgctcacggcatggctctctacagcc 500
Query: 301 taagagctgccatgagcacaccgaaaataaaaccaagaagaaaggagttatgtatcagca 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 taagagctgccatgagcacaccgaaaataacaccaagaagaaaggagttatgtatcagca 560
Query: 361 tggaatgggcaggaagccaaatctaagtccaaatagctgtggatatttagctcaggatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaatgggcaggaagccaaatctaagtccaaatagctgtggatatttagctcaggatca 620
Query: 421 gtttctagggcagcacattctgtctggattctctctgttccagcgagatcctggtcatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttctagggcagcacattctgtctggattctctctgttccagcgagatcctggtcatgt 680
Query: 481 ccaagggtatggaatagctacccagaggggtcaagaagaatctagggagacagactttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaagggtatggaatagctacccagaggggtcaagaagaatctagggagacagactttgc 740
Query: 541 taggatgtccttacccctaagcccattagaattagatcatacgttcttgtaaaataatat 600
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 741 taggatgtccttacccctaagcccattatcattagatcatatgttcttgtaaaataatat 800
Query: 601 tttacaaagctcaccactctccatcatgcaaaaatgtaaaaatgggtatacttctctgag 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 tttacaaagctcaccactctccatcaagcaaaaatgtaaaaatgggtatacttctctgag 860
Query: 661 tctttaagtcttcagtttt 679
|||||||||||||||||||
Sbjct: 861 tctttaagtcttcagtttt 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
