Query= MSMg01no452_g10.b1 MSMg01no452_g10.b1 CHROMAT_FILE:
MSMg01no452_g10.b1 PHD_FILE: MSMg01no452_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:57 2005
(180 letters)
>mm_chr4_18581872_18582451
Length = 580
Score = 306 bits (158), Expect = 7e-88
Identities = 173/178 (97%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 4 ctctatccattaatctatttgcctagcctcacctcatactttaaaaggtatataatgcta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctctatccattaatctatttgcctagcctcacctcatactttaaaaggtatataatgcta 263
Query: 64 ttaactaagattaaaattaagaactaggatatataatgtacttgtgaaatacttatttt- 122
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 ttaactaaaattaaaattaagaactaggatatataatgtagttgtgaaatacttattttt 323
Query: 123 gcatatgtgaaggtctaattgagtcccctataacgcaaattaaataaatgaataagca 180
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 gcatatg-gaaggtctaattgagtcccctataacacaaattaaataaatgaataagca 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space: 98384
Effective search space used: 98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no452_g10.g1 MSMg01no452_g10.g1 CHROMAT_FILE:
MSMg01no452_g10.g1 PHD_FILE: MSMg01no452_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:57 2005
(517 letters)
>mm_chr4_18716848_18717767
Length = 920
Score = 824 bits (426), Expect = 0.0
Identities = 506/556 (91%), Gaps = 39/556 (7%)
Strand = Plus / Minus
Query: 1 aagtggaaataagtatgctttataaaaagaaaagaaagcctgggaaaggaaaagtagatt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 608 aagtggaaataagtatgctttataaaaagaaaagaaagcctgggaaaggacaagtagatt 549
Query: 61 ttgcctgtaatttcaagacttattataaagctaaatgaataccatatacataggcaacag 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 548 ttgcctgtaatttcaagacttattataaagctaaatgaataccatatacacaggcaacag 489
Query: 121 taagcttacctacattgtaaactaaacctaaaaacgtacatatgtaaaactcagcaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 taagcttacctacattgtaaactaaacctaaaaacgtacatatgtaaaactcagcaaagt 429
Query: 181 ttatgtaatattgcattcaactcaacgggaaaatagcattcttgataactaaatatttct 240
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 428 ttatgtaatattgcattcaactcaatgagaaaatagcattcttgataactaaatatttct 369
Query: 241 gaaaaactaataaacttctatcactatctttactacacagaaaaaaatatgaatgtcaat 300
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 368 gcaaaactaataaacttctatcactatctttactacacagaaaaaaatataaatgtaaat 309
Query: 301 caagtaagcataatggtggtggttagtattcatcatctagaagggagagggagtcccagt 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 308 caagtaagcataatggtggtggttagtattcaccatctagaagggagagggagtcccaat 249
Query: 361 gaattgttttgattaggctgttttt--------gttt-tctg----------------tt 395
||||||||||||||||||||||||| |||| | || ||
Sbjct: 248 gaattgttttgattaggctgtttttttttttttgtttgtttggttttttttttttttttt 189
Query: 396 ttttgttttt--------------gccacttagggattgtatgaattggcttaattgggg 441
|||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 188 ttttgttttttttgttttttttttgccacttagggattgtatgaattggcttagttgggg 129
Query: 442 tagaaagatcatgctatatgttggcagcatcacttcaccagaccaggcctcagactgaat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tagaaagatcatgctatatgttggcagcatcacttcaccagaccaggcctcagactgaat 69
Query: 502 gaaaaaaaggaatgta 517
||||||||||||||||
Sbjct: 68 gaaaaaaaggaatgta 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 920
Length adjustment: 10
Effective length of query: 507
Effective length of database: 910
Effective search space: 461370
Effective search space used: 461370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
