BAC Information

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BAC

Clone NameMSMg01-452I01
Chromosome4 (Build37)
Map Location 93,821,688 - 93,822,338
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452I01.T7 (MSMg01no452_i01.b1)MSMg01-452I01.TJ (MSMg01no452_i01.g1)
ACCAG539739AG539740
length745749
length of high quality
(start - end)
654 (48 - 701)578 (81 - 658)
definitionCHROMAT_FILE: MSMg01no452_i01.b1 PHD_FILE: MSMg01no452_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:04 2005CHROMAT_FILE: MSMg01no452_i01.g1 PHD_FILE: MSMg01no452_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTAACATATCCTTCAGCATGCGGAGTAGAGAGCAACGTCCT
AAAAGGGAAAAAAAAAAAAAGAGAAACATCTAAATTTAAGGCTAGGGGAA
GAATTCAAATCCAGTTCACCTTTATGCTACCTATTAAAGAAGAAAACAAC
AAAATGCTAAGATAAAATAGGGGGAAAGTTATCTACAAGTTATGTTACCC
TCATCTTAAGGGGTCTCCATACCTGTATTGCTTCCTCATGAGAAAAGCTA
TAGACGGAGGATCTTTAAATATCTACAAGCCAAATTTAGTTTAATATGCT
TATAAATAGTGCACATGTTTTAAGCATAGACTGTTGCCATCTCTCTGTTG
ATATGGTTTACCCAGACACAAGCCACTGATGGTGAGAGATTTGGCCTTGG
GTTACAGTTCCCAGACTCATTATACAGACATTATTTAAAGGATGATTATA
GCAGTCCCTGGAAAACAGATCATACATTTCTTTGCAAGTACAGACACCAT
ATAAAGTAGTAAGAGAGTACATAACCTTGAACTTGTGAGAAAGAATAGTC
AGAAATCAATACTGAATATTTAAAGGGAACAACATTAGGGAGAAAGACTT
ATTCTCCTAGTAAAGTCCTGAATCCAAACAGGACAGAACAAATCTCTCTG
AGAGGAATACTTTGCACCCAACATTCTCTCGGGAATCACTTGTAT
CCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTG
ATAAGTGGATATTAACCCCAAACCTAGGATACCCAAGATATTAGATATAA
TTTGCTAAACACATGATACTCAAGAAGAATGAAGACTGAAGTGTGGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_i01.b1 MSMg01no452_i01.b1 CHROMAT_FILE:
MSMg01no452_i01.b1 PHD_FILE: MSMg01no452_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:04 2005
         (654 letters)



>mm_chr4_93821485_93822538
          Length = 1054

 Score = 1176 bits (608), Expect = 0.0
 Identities = 641/652 (98%), Gaps = 2/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttaacatatccttcagcatgcggagtagagagcaacgtcctaaaagggaaa 63
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 204 ggaattcttttaacatatccttcagcatgcggagtagagggcaacgtcctaaaaggg-aa 262

                                                                       
Query: 64  aaaaaaaaaagagaaacatctaaatttaaggctaggggaagaattcaaatccagttcacc 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 aaaaaaaaaagagaaacatctaaatttaaggctaggggaagaattaaaatccagttcacc 322

                                                                       
Query: 124 tttatgctacctattaaagaagaaaacaacaaaatgctaagataaaatagggg-gaaagt 182
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||
Sbjct: 323 tttatgctacctattaaaaaagaaaacaacaaaatgctaagataaaataggggaaaaagt 382

                                                                       
Query: 183 tatctacaagttatgttaccctcatcttaaggggtctccatacctgtattgcttcctcat 242
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatctacaagttatgttacccttatcttaaggggtctccatacctgtattgcttcctcat 442

                                                                       
Query: 243 gagaaaagctatagacggaggatctttaaatatctacaagccaaatttagtttaatatgc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagaaaagctatagacggaggatctttaaatatctacaagccaaatttagtttaatatgc 502

                                                                       
Query: 303 ttataaatagtgcacatgttttaagcatagactgttgccatctctctgttgatatggttt 362
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 ttataaataatgcacatgttttaagcatagactgttgccatctctccgttgatatggttt 562

                                                                       
Query: 363 acccagacacaagccactgatggtgagagatttggccttgggttacagttcccagactca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acccagacacaagccactgatggtgagagatttggccttgggttacagttcccagactca 622

                                                                       
Query: 423 ttatacagacattatttaaaggatgattatagcagtccctggaaaacagatcatacattt 482
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 623 ttatacagacattatttaaaggatgattacagcagtccctggaaaacagatcacacattt 682

                                                                       
Query: 483 ctttgcaagtacagacaccatataaagtagtaagagagtacataaccttgaacttgtgag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctttgcaagtacagacaccatataaagtagtaagagagtacataaccttgaacttgtgag 742

                                                                       
Query: 543 aaagaatagtcagaaatcaatactgaatatttaaagggaacaacattagggagaaagact 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaagaatagtcagaaatcaatactgaatatttaaagggaacaacattagggagaaagact 802

                                                               
Query: 603 tattctcctagtaaagtcctgaatccaaacaggacagaacaaatctctctga 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tattctcctagtaaagtcctgaatccaaacaggacagaacaaatctctctga 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)