Query= MSMg01no452_n12.b1 MSMg01no452_n12.b1 CHROMAT_FILE:
MSMg01no452_n12.b1 PHD_FILE: MSMg01no452_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:32 2005
(557 letters)
>mm_chr4_75104431_75105393
Length = 963
Score = 988 bits (511), Expect = 0.0
Identities = 549/573 (95%), Gaps = 21/573 (3%)
Strand = Plus / Plus
Query: 4 ggaattcttagccaataggcaagccctacaaaatttacttgaagaatactacagaatgat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagccaataggcaagccctacaaaatttacttgaagaatactacagaatgat 263
Query: 64 gagaagcagaaacatccagaagacaaagaaaaagaa------taaaccacattttgcaac 117
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 gagaagcagaaacatccagaagacaaagaaaaagaaaaagaataaaccacattttgcaac 323
Query: 118 agaataggaatacaccaaatactacaatattagcacaatgacagaaattaaaacatactt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaataggaatacaccaaatactacaatattagcacaatgacagaaattaaaacatactt 383
Query: 178 taaaaaaaa-tcactctgtatatcaatgacctcaatttcaccaattgaaacaatctatta 236
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 taaaaaaaaatcactctgtatatcaatgacctcaatctcaccaattgaaacaatctatta 443
Query: 237 agcagcaaagtgttcctgtttgttttgttgacacgaaatgcatctagttataaaaatccg 296
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 444 agcagcaaagtgttcctgtttgttttcttgac--gaaatgcatctagttataaaaatccg 501
Query: 297 atgagtctttaaagtgacagtctgaaacgacaccaaaaaaaaaaaa------------tg 344
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 502 atgagtctttaaagtgacagtctgaaacgacaccaaaaaaaaaaaaaaaaaaaaaaaatg 561
Query: 345 ctccaagtaaatggaagtaggaatcaaacaaatgtcattgtcctgcttgacaaactagat 404
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 562 ctccaagtaaatggaagtaggaatcaaacagatgtcattgtcctgcttgacaaactagat 621
Query: 405 tccaagtaaaattaaacatatgaggtaaaataaaagattactttcttctgcttataataa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tccaagtaaaattaaacatatgaggtaaaataaaagattactttcttctgcttataataa 681
Query: 465 tcttctatcaaaagacactatagctctaaaaattacacatcaaatatcagtatatcaaga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcttctatcaaaagacactatagctctaaaaattacacatcaaatatcagtatatcaaga 741
Query: 525 ctcatcaaataaacattacaagaaatacagtca 557
|||||||||||||||||||||||||||||||||
Sbjct: 742 ctcatcaaataaacattacaagaaatacagtca 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 963
Length adjustment: 10
Effective length of query: 547
Effective length of database: 953
Effective search space: 521291
Effective search space used: 521291
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_n12.g1 MSMg01no452_n12.g1 CHROMAT_FILE:
MSMg01no452_n12.g1 PHD_FILE: MSMg01no452_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:32 2005
(666 letters)
>mm_chr4_75243541_75244606
Length = 1066
Score = 1243 bits (643), Expect = 0.0
Identities = 660/666 (99%)
Strand = Plus / Minus
Query: 1 ttactgagttaaaattaaatgaatcattcactaaatagaaaatctcagtgtatagaagtt 60
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 866 ttactgagttaaaattaaatgaaccattcactaaatagaaaatctcactgtatagacgtt 807
Query: 61 agaaacacctttgtcaaagaagtattctagaggacttatgcgtgtatgtatgtgtgttaa 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 806 agaaacacctttgtcaaagaagtattctagaggacttatgggtgtatgtatgtgtgttaa 747
Query: 121 atgctgtgatatgttgctaaatattgacattacatttcataaagatatttctaaaggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 atgctgtgatatgttgctaaatattgacattacatttcataaagatatttctaaaggtaa 687
Query: 181 tctggttctatttgggaacaatatatattttatatatggctaactaaatgttattgccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tctggttctatttgggaacaatatatattttatatatggctaactaaatgttattgccaa 627
Query: 241 ttcacctgttgtacccaactgatttcatgaatttgttctcacctactcatcttctaccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttcacctgttgtacccaactgatttcatgaatttgttctcacctactcatcttctaccca 567
Query: 301 aagtctctgatcttattttattataatacttatttccatacatgaccctaatttgacttc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 566 aagtctctgatcttattttattataatacttatttccatacatgaccctaatttaacttc 507
Query: 361 tgcaaggagatggattctttctagtcgaagtcactcagtgcaagtggttttgatttgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgcaaggagatggattctttctagtcgaagtcactcagtgcaagtggttttgatttgttt 447
Query: 421 gttttgttttaaatgtttagatctgctccaattagaggcattcattaacatgctgtgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttttgttttaaatgtttagatctgctccaattagaggcattcattaacatgctgtgttt 387
Query: 481 agcatgcagcctgcagaaatctcagaagattctgatggtttaaaagacaaataaattgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agcatgcagcctgcagaaatctcagaagattctgatggtttaaaagacaaataaattgag 327
Query: 541 tttagctaanacagttaagatttctcactgtcaactatgccaacatttataaagccttac 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttagctaaaacagttaagatttctcactgtcaactatgccaacatttataaagccttac 267
Query: 601 atataatcttcagcagatcctaaagaaggaagctatacactctcatgagaaattaacatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atataatcttcagcagatcctaaagaaggaagctatacactctcatgagaaattaacatt 207
Query: 661 tacctg 666
||||||
Sbjct: 206 tacctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
