Query= MSMg01no453_a21.b1 MSMg01no453_a21.b1 CHROMAT_FILE:
MSMg01no453_a21.b1 PHD_FILE: MSMg01no453_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:48 2005
(669 letters)
>mm_chr4_110629083_110630153
Length = 1071
Score = 1232 bits (637), Expect = 0.0
Identities = 659/667 (98%), Gaps = 2/667 (0%)
Strand = Plus / Plus
Query: 5 gaattccttatgagaatttttatgtaatgcacctggcacttgctaaatgctcaacaaatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttatgagaatttttatgtaatgcacctggcacttgctaaatgctcaacaaatg 264
Query: 65 tcatctattattaataacatgtaaaatgctatacaaatgcaaggaattgttaatattatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatctattattaataacatgtaaaatgctatacaaatgcaaggaattgttaatattatt 324
Query: 125 ctagctttgatccttgttcaaattttaatgactagtgagatgatagtctccaaatgtctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagctttgatccttgttcaaattttaatgactagtgagatgatagtctccaaatgtctg 384
Query: 185 tatttatagaaaactagcatttcataaatattgaatttttcttttatctacaaatgatgt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatttatagaaaactagcatttcataaatattgaatttttcttttatctacaaatgatgc 444
Query: 245 ttggtaattttctgtaaatgctagcttgaaaagctcaggtttataaaaatgcagatattt 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggtaattttctataaatgctagcttgaaaagctcaggtttataaaaatgcagatattt 504
Query: 305 gataacagttataaacattctttattaaatagtaaaaatatctctc--gtcatgtttttt 362
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 gataacagttataaacattctttattaaatagtaaaaatatctctctggtcatgtttttt 564
Query: 363 acattactgcatcaaatcaattaaatagctgtacttttgctctctgtatatcaataaagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acattactgcatcaaatcaattaaatagctgtacttttgctctctgtatatcaataaagt 624
Query: 423 ctgagtaaagggcaaggctttactgtgagtctctcaatcgaacccaagaagacaataata 482
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgagtaaagggcaaggctttactctgagtctctcaatcgaacccaagaagacaataata 684
Query: 483 taggcaggcatgtgtgtcagtggatacttcacttacgtcaataaaatgatatcactatgt 542
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taggtaggcatgtgtgtcagtggatacttcacttacgtcaataaaatgatatcactatgt 744
Query: 543 ttctgttcataggaacctttgaagtacagtaaaatcattcagttttccaagttctatgtt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttctgttcataggaacctttgaagtacagtaaaatcattcagttttccaagttctatgtt 804
Query: 603 aagatcttatgcaacaagaataattgctatcttactttctaagtgttatatttggatatt 662
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagatcttatgcaacaggactaattgctatcttactttctaagtgttatatttggatatt 864
Query: 663 ctctgtc 669
|||||||
Sbjct: 865 ctctgtc 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1071
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1061
Effective search space: 699199
Effective search space used: 699199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_a21.g1 MSMg01no453_a21.g1 CHROMAT_FILE:
MSMg01no453_a21.g1 PHD_FILE: MSMg01no453_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:48 2005
(655 letters)
>mm_chr4_110815319_110816373
Length = 1055
Score = 1259 bits (651), Expect = 0.0
Identities = 654/655 (99%)
Strand = Plus / Minus
Query: 1 taagtttagatgcatgaatataaaaaaaaatcacacttaatcatttaaactatttcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 taagtttagatgcatgaatataaaaaaaaatcacacttaatcatttaaactatttcaatc 796
Query: 61 ttagctgttcactttgtaatagatgatttggctagatagtcttgcaaagactcagttcaa 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttagctgctcactttgtaatagatgatttggctagatagtcttgcaaagactcagttcaa 736
Query: 121 gagcatttcagttatttatagccaatgcataatatgaggttatggaaaatttgggttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gagcatttcagttatttatagccaatgcataatatgaggttatggaaaatttgggttatg 676
Query: 181 ttttcttaattaatgatgcttatttctgtcttggcctggtgccaaaccctaactatacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttttcttaattaatgatgcttatttctgtcttggcctggtgccaaaccctaactatacag 616
Query: 241 tccattaagtacagagaatgaactccagactctcaagtatgattagtatttttagttggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tccattaagtacagagaatgaactccagactctcaagtatgattagtatttttagttggg 556
Query: 301 aagaaactgagggaacttaggagtgatgaaagataactatatagtgagatgaagacacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagaaactgagggaacttaggagtgatgaaagataactatatagtgagatgaagacacaa 496
Query: 361 agcacaaaggcaagagttctgtgctgggccctttcagctctccaaatgtatctttttggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agcacaaaggcaagagttctgtgctgggccctttcagctctccaaatgtatctttttggc 436
Query: 421 tatgtcaatagattggtaaattcaaatgatgaaatggattaaatgggaagcactgtgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tatgtcaatagattggtaaattcaaatgatgaaatggattaaatgggaagcactgtgcat 376
Query: 481 agatactgcttcctctttcaagtcttatgcttgattcccagagtttgcagatctgttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agatactgcttcctctttcaagtcttatgcttgattcccagagtttgcagatctgttttc 316
Query: 541 ttcaagtgaactttctgtcaaaatggtcaaagtcttttgtattttgctctactacactat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttcaagtgaactttctgtcaaaatggtcaaagtcttttgtattttgctctactacactat 256
Query: 601 cagaagtcaaaaggagtgttagaagttatgcataattcagatgtctatggcatct 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cagaagtcaaaaggagtgttagaagttatgcataattcagatgtctatggcatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
