Query= MSMg01no453_d12.b1 MSMg01no453_d12.b1 CHROMAT_FILE:
MSMg01no453_d12.b1 PHD_FILE: MSMg01no453_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:01 2005
(607 letters)
>mm_chr4_110820629_110821638
Length = 1010
Score = 1116 bits (577), Expect = 0.0
Identities = 599/607 (98%), Gaps = 5/607 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgcacctcca-a-tccactctgtatttactgaaaacacaaaacctgctagtat 62
||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcaccac-agagtccactctgtatttactgaaaacacaaaacctgctagtat 263
Query: 63 cactctctgcttagaaagttatagtgacttttattgcaacttaaaactgtgagtgtttag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactctctgcttagaaagttatagtgacttttattgcaacttaaaactgtgagtgtttag 323
Query: 123 gaaaagtaaagggaccaaaaaaaaaaa--gagccatattgtaggtcaatattggtagggg 180
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 324 gaaaagtaaagggaccaaaaaaaaaaaaagagccatattgtaggtcagtattggtagggg 383
Query: 181 caaataagagcaaactataatggtatgtcttataaaatgttaggattaaaaataaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaataagagcaaactataatggtatgtcttataaaatgttaggattaaaaataaaaaaa 443
Query: 241 ttgtatgctactaaaacattaattaaaaataatctcaggagaaaactcattgttatgttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtatgctactaaaacattaattaaaaataatctcaggagaaaactcattgttatgttg 503
Query: 301 actaagcctataggacctggtcttttcacagctgcttcccagctctattgcattgtcatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actaagcctataggacctggtcttttcacagctgcttcccagctctattgcattgtcatg 563
Query: 361 atgtagtcaacattatgtagtagacattatttttgtcgtccaagcaccgctagctcattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgtagtcaacattatgtagtagacattatttttgtcgtccaagcaccgctagctcattc 623
Query: 421 tctgatgttcttctcacgagtcaacttacatcattcagagttcaatcaagttgtcttcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctgatgttcttctcacgagtcaacttacatcattcagagttcaatcaagttgtcttcct 683
Query: 481 cagtgaatgtttcggaacactctagttaaaatacattacatcttcctattcactctcaca 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagtggatgtttcggaacactctagttaaaatacattacatcttcctattcactctcaca 743
Query: 541 tcacaccatttaattttattcatgccatctatcagtaactgaagttatctcatttaggtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcacaccatttaattttattcatgccatctatcagtaactgaagttatctcatttaggtt 803
Query: 601 attaacc 607
|||||||
Sbjct: 804 attaacc 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1010
Length adjustment: 10
Effective length of query: 597
Effective length of database: 1000
Effective search space: 597000
Effective search space used: 597000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_d12.g1 MSMg01no453_d12.g1 CHROMAT_FILE:
MSMg01no453_d12.g1 PHD_FILE: MSMg01no453_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:01 2005
(571 letters)
>mm_chr4_110967014_110967984
Length = 971
Score = 1096 bits (567), Expect = 0.0
Identities = 570/571 (99%)
Strand = Plus / Minus
Query: 1 catcctgatttcattaaatattcataaaggccaattagaagaggagagaaagaggccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 catcctgatttcattaaatattcataaaggccaattagaagaggagagaaagaggccatg 712
Query: 61 aggcagccccttccatcatcctgtcagaggccagtgagctgactgttagacacagaccag 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 711 aggcagccccttccatcatcctgtcagaggccagcgagctgactgttagacacagaccag 652
Query: 121 ccagtggtcaatatggccatgacctttctacactcttctcaagggtcacttctcactatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ccagtggtcaatatggccatgacctttctacactcttctcaagggtcacttctcactatc 592
Query: 181 ccagcaagggacacaagaccagcaggggatgaacagtaggggccaggcaaagagaggcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ccagcaagggacacaagaccagcaggggatgaacagtaggggccaggcaaagagaggcag 532
Query: 241 ctcataattctgacagaaaggtgcttagtgtgtagaatgcaaaatgcaaatgctgggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctcataattctgacagaaaggtgcttagtgtgtagaatgcaaaatgcaaatgctgggaag 472
Query: 301 ccaatcactgctagaatgaaaatctctccctaatgagtgatgacgatgggaaagagctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ccaatcactgctagaatgaaaatctctccctaatgagtgatgacgatgggaaagagctga 412
Query: 361 ttgcactgaagaaaaactgtttaaaattcataatcaatcaagcaagttgattttaacctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttgcactgaagaaaaactgtttaaaattcataatcaatcaagcaagttgattttaacctt 352
Query: 421 ttgtaactaagccatctggttcagttcaccaagaggagttcatgccttcctcccccactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttgtaactaagccatctggttcagttcaccaagaggagttcatgccttcctcccccactg 292
Query: 481 ctcccactcctcaagacacttagaaaataggtacccatggagactccgtgcaagttgggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctcccactcctcaagacacttagaaaataggtacccatggagactccgtgcaagttgggc 232
Query: 541 aaattaggaaaagaaggtgggggagacctca 571
|||||||||||||||||||||||||||||||
Sbjct: 231 aaattaggaaaagaaggtgggggagacctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
