Query= MSMg01no453_g09.b1 MSMg01no453_g09.b1 CHROMAT_FILE:
MSMg01no453_g09.b1 PHD_FILE: MSMg01no453_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:16 2005
(663 letters)
>mm_chr4_93606949_93608011
Length = 1063
Score = 878 bits (454), Expect = 0.0
Identities = 481/490 (98%), Gaps = 1/490 (0%)
Strand = Plus / Minus
Query: 1 atctatctatctatctatctatctatctatctatctatctatctatctaaagaggaagac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atctatctatctatc-atctatctatctatctatctatctatctatctaaagaggaagac 431
Query: 61 agagagggagagggagagaaaggaagagactttctcaacatttttaagaatataaagtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agagagggagagggagagaaaggaagagactttctcaacatttttaagaatataaagtat 371
Query: 121 cataaacttctacattctttgtagtagaactattgaatttattctctctaatattttata 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 370 cataaacttctacattctttgtagtagaattattgaatttattctctctaatattttata 311
Query: 181 gtctttacttccttctctacttctctaaccttgggtactcacaattcttctctgctatta 240
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 310 gtctttacttccttctctacttctctaaccttaggtacccacaattcttctctgctatta 251
Query: 241 tgagatcatttcactttagcacataagaaataacttgacacgtacctttctcagcctagc 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 250 tgagatcatttcactttagcacatcagaaataacttgacacgtacctttctcagcctagc 191
Query: 301 ttactttagttaatgtcatgtgtttcaggttcagccatctctcacaaatgacatgatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttactttagttaatgtcatgtgtttcaggttcagccatctctcacaaatgacatgatttc 131
Query: 361 tcatgtatatcttatatattcaatatatcagattatttctgatgcagttttgctagacac 420
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 130 tcatatatatcttatatattcaatatatcatattatttctgatgcagttttgctagacac 71
Query: 421 tcaggtttgaatctataacttggctactgtaatacttcagtgaacataggcttacaggtg 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 70 tcaggtttgaatctataacttggctactgtaacacttcagtgaacataggcttacaggtg 11
Query: 481 tcttattgat 490
| ||||||||
Sbjct: 10 ttttattgat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_g09.g1 MSMg01no453_g09.g1 CHROMAT_FILE:
MSMg01no453_g09.g1 PHD_FILE: MSMg01no453_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:16 2005
(671 letters)
>mm_chr4_93412346_93413420
Length = 1075
Score = 1251 bits (647), Expect = 0.0
Identities = 667/675 (98%), Gaps = 4/675 (0%)
Strand = Plus / Minus
Query: 1 tatatctacacaagcaccacatgttacttgagtataagtaacgtctgcctacatgaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tatatctacacaagcaccacatgttacttgagtataagtaacgtctgcctacatgaaggg 816
Query: 61 ttaatactaagtgtgaaattctaatagaagacactatgtttagacttaatagtagtagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttaatactaagtgtgaaattctaatagaagacactatgtttagacttaatagtagtagca 756
Query: 121 aataaaacaccgaagcccttccagggataacagattggcaaagaaattgcatgtgaacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aataaaacaccgaagcccttccagggataacagattggcaaagaaattgcatgtgaacta 696
Query: 181 aaaacaaatctcacacaatgtataatgaaggcactcctgaaggttttgttgtaagcataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aaaacaaatctcacacaatgtataatgaaggcactcctgaaggttttgttgtaagcataa 636
Query: 241 aacaagaacagaaaggcaaaagtggcctgccaacttgctttctgcatcaatgtttttacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aacaagaacagaaaggcaaaagtggcctgccaacttgctttctgcatcaatgtttttacc 576
Query: 301 atagtgaagagtatctttgtgaaactgttcagccatttttatttttatcttaaaagcaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atagtgaagagtatctttgtgaaactgttcagccatttttatttttatcttaaaagcaac 516
Query: 361 atactttatattttagtatagtaaacatgcttttttgaggaaaacaggtagtaattatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atactttatattttagtatagtaaacatgcttttttgaggaaaacaggtagtaattatgg 456
Query: 421 ccctatatattgacttgtagggtttcatcatttacaaaaaaa---a-aaaaatatatcat 476
|||||||||||||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct: 455 ccctatatattgacttgtagggtttcatcatttacaaaaaaatatatatatatatatcat 396
Query: 477 gactgctcatcattattatgccacagagccttaacaaacataaatgttttagttatgttt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gactgctcatcattattatgccacagagccttaacaaacataaatgttttagttatgttt 336
Query: 537 tagggaaacaaatccttactaggtacctgagtaacagcctttattttgtgttcctctctt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagggaaacaaatccttactaggtacctgagtaacagcctttattttgtgttcctctctt 276
Query: 597 gactatgctattaaagatatgacacaagttatcactgcttcctgaaacccctgcttaccc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 275 gactatgctattaaagatatgacacaagttatcactgcttcctgaaacccctgcttagcc 216
Query: 657 tctcatcaacagaca 671
| |||||||||||||
Sbjct: 215 tatcatcaacagaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1075
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1065
Effective search space: 703965
Effective search space used: 703965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
