BAC Information

Click to search

BAC

Clone NameMSMg01-453O07
Chromosome4 (Build37)
Map Location 119,431,194 - 119,621,914
singlet/doubletdoublet
Overlap geneHivep3
Upstream geneOlfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneEdn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453O07.T7 (MSMg01no453_o07.b1)MSMg01-453O07.TJ (MSMg01no453_o07.g1)
ACCAG540799AG540800
length747746
length of high quality
(start - end)
374 (52 - 425)343 (80 - 422)
definitionCHROMAT_FILE: MSMg01no453_o07.b1 PHD_FILE: MSMg01no453_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:54 2005CHROMAT_FILE: MSMg01no453_o07.g1 PHD_FILE: MSMg01no453_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,431,194 - 119,431,561)(119,621,572 - 119,621,914)
sequence
CCTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGTGGATGAAGAACCCCATTGCTCAGAAAATGACAAAA
GTTCAATTGCATTATGGGGTTTTCCTCTTGCATGATATTATTTTTGGAAG
TCATCCATTTGGATACCCTAGGCTCTATCCCCCAACTCATTACTCTCCTT
GCCTAGCTTCCTAATGCAAGAATCATCTTACTTACTAGAAATCAGCTTTG
AAGTCTTCATTTCCACTTCACTCACTGACATGTAAAAATACTAGCAGACT
CTTACTTCCAGAAATATCTAGAAGAAAGGGCAATATGATGCCATTAAAAC
CGGAGCCCTCAGATCGGGAGCTGACTGAGTATCTTGGAGACACATGTGGA
GAATCGGAGCCTTGCATGTTCCACACGCACCTCTCACTGATCAGTCTGCT
GCTTGAGCATGTAGATAGGGTGGGAGGAGAAATCTGTGCTGTTCCCTTCT
GGGTTTCAGACTTGAGGGGTTCTAGAGTGGAACTCCAGGGGTTCCTCTGA
CTATTCCACAAGATGGTTCATGGATCTGGAGTCGCCAAGACAATTGGATT
ATCTGAAAGAAGTAGGCAGGGCTTGCATTTGTTTTTTATTTGCATATGCA
TGTGTAGCAACACCAGGAGGCCTGTGTGTATATATGTTGCACATGCATGT
AGAGGCTGGAGGCCAGTGATGGGTGTCCTCTTCAATTGCTCTCAACC
CCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTTCCGAGAACTGGAAA
ACCGTGAACAAGCAGCTTGGTGTATTTTAATGAATGTCCTTCCCCAGCCC
CACCAGCTCGTTCCTTTTTTGGTTTTCTCATCTCCCTAGCTATTTATAAA
GCCCTGAACCCTCTGTTTAGAATTTGGTTCCTGGCTCACTCTTGAATTTG
CCTGTCAGAGATCTCCATGGAGAGGGAGGTCCTGTTATCTACCCGGGTTC
ATCCCGGGTTCATAAGATGTTGCATAATCCTGCCATGTCCTGAAGCGGCA
GAGTGGAAACGGAAGGACCCAGGTGCCTGTCAACACCTGCTTGGCTGCCG
CTCGGTCGAGTGTCTCTGAGCACCTCTCAGAGCCTTGGAGTGGGAAGAGC
AATGTTTACCCACACATCCTTCCCTGGGATGTTAGAGTTTGCTTCAGCTC
ATGTCTGGGTTTCCAGTGCTCTCCTGATGAGCGTACGGTAAGAAGCAAGC
AGAAACTATACCTGTGACCCTCTGTCTCCATGGAGTCCACCCTCCTACAA
TGGCCACCTTCCCAGTCGTCTCCCTGCTTTCCCACCGGGTGCAACTGTCT
CATTACCACCCTCACTTTCCTCCAAGGTTGCCAGCCCTCTCCCACTATAT
AGGAGATGTGGTATAGGTATGGAGAGCTATGTACCTGTTTCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_o07.b1 MSMg01no453_o07.b1 CHROMAT_FILE:
MSMg01no453_o07.b1 PHD_FILE: MSMg01no453_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:54 2005
         (374 letters)



>mm_chr4_119430990_119431763
          Length = 774

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtggatgaagaaccccattgctcagaaaatgacaaaagttcaattgcattat 64
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcatgtggatgaagaaccccgttgctcagaaaatgacaaaagttcaattgtattat 264

                                                                       
Query: 65  ggggttttcctcttgcatgatattatttttggaagtcatccatttggataccctaggctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggttttcctcttgcatgatattatttttggaagtcatccatttggataccctaggctc 324

                                                                       
Query: 125 tatcccccaactcattactctccttgcctagcttcctaatgcaagaatcatcttacttac 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 tatcccccaactcattactctccttgcctagcttcctaatggaagaatcatcttacttac 384

                                                                       
Query: 185 tagaaatcagctttgaagtcttcatttccacttcactcactgacatgtaaaaatactagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaatcagctttgaagtcttcatttccacttcactcactgacatgtaaaaatactagc 444

                                                                       
Query: 245 agactcttacttccagaaatatctagaagaaagggcaatatgatgccattaaaaccggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agactcttacttccagaaatatctagaagaaagggcaatatgatgccattaaaaccggag 504

                                                                       
Query: 305 ccctcagatcgggagctgactgagtatcttggagacacatgtggagaatcggagccttgc 364
           ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||
Sbjct: 505 ccctcagatcgggagctgactgagtgtcttggagacacatgtggagaatcagagccctgc 564

                   
Query: 365 atgttcca 372
           ||||||||
Sbjct: 565 atgttcca 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no453_o07.g1 MSMg01no453_o07.g1 CHROMAT_FILE:
MSMg01no453_o07.g1 PHD_FILE: MSMg01no453_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:54 2005
         (343 letters)



>mm_chr4_119621372_119622114
          Length = 743

 Score =  632 bits (327), Expect = 0.0
 Identities = 339/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcttccgagaactggaaaaccgtgaacaagcagcttggtgtattttaatgaatgtcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caggcttctgagaactggaaaaccgtgaacaagcagcttggtgtattttaatgaatgtcc 484

                                                                       
Query: 61  ttccccagccccaccagctcgttccttttttggttttctcatctccctagctatttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttccccagccccaccagctcgttccttttttggttttctcatctccctagctatttataa 424

                                                                       
Query: 121 agccctgaaccctctgtttagaatttggttcctggctcactcttgaatttgcctgtcaga 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agccctgaaccctctgtttaggatttggttcctggctcactcttgaatttgcctgtcaga 364

                                                                       
Query: 181 gatctccatggagagggaggtcctgttatctacccgggttcatcccgggttcataagatg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 363 gatctccatggagagggaggtcctgttatctaccctggttcatcccgggttcataagatg 304

                                                                       
Query: 241 ttgcataatcctgccatgtcctgaagcggcagagtggaaacggaaggacccaggtgcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttgcataatcctgccatgtcctgaagcggcagagtggaaacggaaggacccaggtgcctg 244

                                                      
Query: 301 tcaacacctgcttggctgccgctcggtcgagtgtctctgagca 343
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 243 tcaacacctgcttggctgccgctcggttgagtgtctctgagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)