Query= MSMg01no453_p17.b1 MSMg01no453_p17.b1 CHROMAT_FILE:
MSMg01no453_p17.b1 PHD_FILE: MSMg01no453_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:01 2005
(649 letters)
>mm_chr4_58011033_58012081
Length = 1049
Score = 1187 bits (614), Expect = 0.0
Identities = 640/652 (98%), Gaps = 6/652 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaggaccaggaatgggagtgggtgggttggggagtcgggaggcgatagggaat 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 198 ggaattccaggaccaggaatgggagtgggtgggttggggagtggggaggcgatagggaat 257
Query: 64 tttcggaggggaaactaggaaaggggataacatttgaaatgtaaataaagaaaatatcta 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttttggaggggaaactaggaaaggggataacatttgaaatgtaaataaagaaaatatcta 317
Query: 124 aataataataacaat------aacaataataataatgaagacacttggtgccaatgaaag 177
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aataataataacaataacaacaacaataataataatgaagacacttggtgccaatgaaag 377
Query: 178 acttcctgcctggttcgcctcacagaaaaatttaaatgaattaatctttttgcttgtcca 237
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acttcctgcctggttcacctcacagaaaaatttaaatgaattaatctttttgcttgtcca 437
Query: 238 ccccaatctccctcttttgcagtgactctacagaccactgtgagacagaaactgagggag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccccaatctccctcttttgcagtgactctacagaccactgtgagacagaaactgagggag 497
Query: 298 aaatgttcagaagggttatggtctaactctatatgccaagggaaatgtgggaccccatga 357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 498 aaatgttcagaagggttatggtctaactctagatgccaagggaaatgtgggaccccatga 557
Query: 358 aatcctaaagatctgctcagaccccattttgagatttgagttaaaagaagtaaaagattt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aatcctaaagatctgctcagaccccattttgagatttgagttaaaagaagtaaaagattt 617
Query: 418 agagtgttatttccattagggtctctgcatctcttggctcttgcctttgatatagaaagg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agagtgttatttccattagggtctctgcatctcttggctcttgcctttgatatagaaagg 677
Query: 478 tttttttttttttttcattttgtttttgttgatattcttggctgtttttatatgattaca 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttttttttttttttccattttgtttttgttgatattcttggctgtttttatatgattaca 737
Query: 538 tatactataagattagaaatagatgcattcactcgttgaggtagagattgtttcaaattg 597
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 738 tatactataagattagaaatagatgcattcactcattgaggtagagattgtttcaaattg 797
Query: 598 tttaggtttcaatggagattttagtttttatgtatgtctctctctctctctg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttaggtttcaatggagattttagtttttatgtatgtctctctctctctctg 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_p17.g1 MSMg01no453_p17.g1 CHROMAT_FILE:
MSMg01no453_p17.g1 PHD_FILE: MSMg01no453_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:02 2005
(690 letters)
>mm_chr4_58188847_58189936
Length = 1090
Score = 1303 bits (674), Expect = 0.0
Identities = 686/690 (99%)
Strand = Plus / Minus
Query: 1 agtctaagattttctatctacttcagctggagatagagactaatcacttgctccatgcca 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 agtctaagattttctatcttcttcagctggagatagagactaatcacttgctccatgcca 831
Query: 61 ggctcagccttaacccagccttaagccagtgtctgaatggctgtactcaaggattcttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ggctcagccttaacccagccttaagccagtgtctgaatggctgtactcaaggattcttgt 771
Query: 121 catgctttcctccagctcctgcctcaaatgctcaatatggtctcttcctacataacttgt 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 770 catgctttcctccagctcctgcctcaaatgctcaatatggtctctttctacataacttgt 711
Query: 181 gtttctgtacttacaacaactaagaagcagactggatgatggtttatatccttaaacgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gtttctgtacttacaacaactaagaagcagactggatgatggtttatatccttaaacgta 651
Query: 241 tgtgtcgatatttttgaatcaaaccacagccgtgatgctatttattctagagtcagtagc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgtgttgatatttttgaatcaaaccacagccgtgatgctatttattctagagtcagtagc 591
Query: 301 ccacagtcggcactcttgggcagtggtcaggatcatggttttatttctaacttgaacggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ccacagtcggcactcttgggcagtggtcaggatcatggttttatttctaacttgaacggg 531
Query: 361 atttgggaagtttggttacggccgcctgacctcacacagaggtcagagaatgctgctgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atttgggaagtttggttacggccgcctgacctcacacagaggtcagagaatgctgctgtt 471
Query: 421 ggaagccagaggagagatctgaagcaccgagtgtgctaattacctgctgcatctggagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggaagccagaggagagatctgaagcaccgagtgtgctaattacctgctgcatctggagag 411
Query: 481 tccagtctacactgcttcatttctgcctgaccccgaatggcctgaagcgcttaggatgaa 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 410 tccagtctacactgcttcatttctgcctgaccccaaatggcctgaagcgcttaggatgaa 351
Query: 541 gtcccagactgaaataactgaactggccaaaaactaacccccagagtatgttcctgcaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtcccagactgaaataactgaactggccaaaaactaacccccagagtatgttcctgcaaa 291
Query: 601 caacacacattcatatgtgggtggaggtagggaacagtgggaaacacacagatgagaaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 caacacacattcatatgtgggtggaggtagggaacagtgggaaacacacagatgagaaga 231
Query: 661 gctttcttctctccagtttgctcttgactt 690
||||||||||||||||||||||||||||||
Sbjct: 230 gctttcttctctccagtttgctcttgactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
