BAC Information

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BAC

Clone NameMSMg01-455E16
Chromosome4 (Build37)
Map Location 86,320,580 - 86,320,908
singlet/doubletsinglet
Overlap genenone
Upstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp
Downstream geneEG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455E16.T7 (MSMg01no455_e16.b1)MSMg01-455E16.TJ (MSMg01no455_e16.g1)
ACCAG541866AG541867
length742771
length of high quality
(start - end)
538 (45 - 582)389 (72 - 460)
definitionCHROMAT_FILE: MSMg01no455_e16.b1 PHD_FILE: MSMg01no455_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:45 2005CHROMAT_FILE: MSMg01no455_e16.g1 PHD_FILE: MSMg01no455_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATTTACAGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAAAATCATCAGGGAAATGCAAATCAAAACAACCCTGATAC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAACTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAA
AATTGGACATAGTACTACCAGAGGATACCAGGGCATATATCCAGAAGATG
TCCCAACTGGTAAGAAGGACACATGTTCCACTATGTTCATAGCAGCCTTA
TTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGA
ATGGATATAGAAAATGTGGTAAATTTAAACAATGGAGTACTATTCAGCTA
TTAAAAAGAATAAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAG
GGCATCATCTTGAGTAAGGTAACCCAATCACAAAAGAACTCACCCAATAT
GTACTCACTGATAAGTGGACATTAACCCAGAACCTTAGAATACCCAAGAT
ATTAGATACAATTTGTGAAACTCATGGAACTCCAGAAGAACGAAGAACCA
AGTGTGGACACTTTGCCCCTTCTTAAGATTGAAAACAAATCC
CCATGATAGTGGGAGGCCTGGCGGCCGCCGGTCCAACAAAGGGTAGGTGA
ACTATAGATTGCCACGCGGAATTCACATTCTAGACCAGGCTGGCATGGAG
CTCAGAGGTCCATCTGTCTCTACCTCCTGAGTGTTGGAGTTAAAGGCACA
TGCCACTACCATCTGGTGGGGAGTTTTCTTGATCCATGATTGATGTGGGA
GGGCCCAGCTCACTGGGTGGTGTCAACCCTGAGCTGCTGCTTCTGGGTGC
TATGAGAAGGAGGCTAAGTTATCTATGGTGAGCACACTAGTAAGCAGCAC
CCCTCTGTGGCCTCTGTATCAGCTTCTGACTTGAGAAGTTTGTGGTCTTA
GGGTGGTGAGATGCCTTACAGAGGCACAGAGCTGAATCTTCCACAGCAGA
GCTTACCAGAGGCCCCACATATTCTAGACAGAGAGGGAGGAGGAAATCAG
AGACCCAGCAGCACAAAGAAGGGGATTGGAAAAGGGAGACTCAGACAGAG
TGGAGCTAGAACACTTGGTGTTCATACAAGAGGTAGATATAATGCTGTTG
GAAGGTGTTTGTTTTATTTTATTTTTTCTCCCTCTTTTTCTCAAAATTTT
TTCTTGTTTCTCTCTTTTTTTCTCTCTCTTTGTTTATTTATCTATTTTTC
CCTTTTCACTTCCTCTTCCGCTCCATTTTCTCTTTATTTATCTGCTCTTT
CTTATCCCTATCTTCTTATTTTTCTTCTCCCCCCCTCCTTTTCTCTTGTG
TGTATTATTCACCCTACTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_e16.g1 MSMg01no455_e16.g1 CHROMAT_FILE:
MSMg01no455_e16.g1 PHD_FILE: MSMg01no455_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:46 2005
         (389 letters)



>mm_chr4_86320120_86320908
          Length = 789

 Score =  598 bits (309), Expect = e-175
 Identities = 324/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 61  tgttggagttaaaggcacatgccactaccatctggtggggagttttcttgatccatgatt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 789 tgttggagttaaaggcacatgccaccaccatctggtggggagttttcttgatccatgatt 730

                                                                       
Query: 121 gatgtgggagggcccagctcactgggtggtgtcaaccctgagctgctgcttctgggtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gatgtgggagggcccagctcactgggtggtgtcaaccctgagctgctgcttctgggtgct 670

                                                                       
Query: 181 atgagaaggaggctaagttatctatggtgagcacactagtaagcagcacccctctgtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atgagaaggaggctaagttatctatggtgagcacactagtaagcagcacccctctgtggc 610

                                                                       
Query: 241 ctctgtatcagcttctgacttgagaagtttgtggtcttagggtggtgagatgccttacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctctgtatcagcttctgacttgagaagtttgtggtcttagggtggtgagatgccttacag 550

                                                                       
Query: 301 aggcacagagctgaatcttccacagcagagcttaccagaggccccacatattctagacag 360
           |||||||||||||||||||||||||||||||||||||||||   || |||||||||||||
Sbjct: 549 aggcacagagctgaatcttccacagcagagcttaccagagggttcagatattctagacag 490

                                        
Query: 361 agagggaggaggaaatcagagacccagca 389
           |||||||||||||||||||||||||||||
Sbjct: 489 agagggaggaggaaatcagagacccagca 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)