BAC Information

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BAC

Clone NameMSMg01-455G05
Chromosome4 (Build37)
Map Location 19,235,991 - 19,236,558
singlet/doubletsinglet
Overlap geneCngb3
Upstream geneLOC667251, LOC435772, LOC623122
Downstream geneCpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455G05.T7 (MSMg01no455_g05.b1)MSMg01-455G05.TJ (MSMg01no455_g05.g1)
ACCAG541939AG541940
length730734
length of high quality
(start - end)
639 (47 - 685)568 (77 - 644)
definitionCHROMAT_FILE: MSMg01no455_g05.b1 PHD_FILE: MSMg01no455_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:53 2005CHROMAT_FILE: MSMg01no455_g05.g1 PHD_FILE: MSMg01no455_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACCTTACACCTCCTAAACCTGATAAACAACTTCAGTGCAGAAG
CTGGATATAAAATTAACTCAAACAAGTCAATGGTCTTTCTCTACACAAAG
GATAAACAGGCTGAAAAAGAAATAAGGGGAAACAACACCCTTCATAATAG
TCACAAAAAATATAAAATACCTTGGTGTGAATCTAAGTAAAGAAGTAAAA
GATCTGTATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTGAAGATCT
CAGAAGATGGAAATCTCTCCCATGCTCATGGATTGGCAGGATTAATATAG
TAAAAATGGCTATCCTGCCAAAAGCAATCTACAGTATCAATGAAATCCCC
ATCAAAATTCCAACTCAATTCTTCAACAAATTAGAAAGGGCAATCTCCAA
ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAATG
ATAAAAGAGCCTCTGGTGGAATCACCATGCCTGACCTAAAGCTATACTAC
AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCTACAGAAAAGT
AGACCAGTAGAATAGAATTCAAGACCCAGAAATGAACCCACACACCTATG
GTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGGAAAAAGAC
AGCATTTTCAACAAATGGTGCTGGCACAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCACACAGGACTAACCTGGAGAT
ACTGTCAGGCCAAGGAAAAATATGCTGAAAGATTGTTTATTACATGATAA
AAGTTTCACATTGTTTATATGCCTCGTAATAATAACAAAACACAGGATCA
ACTCTCGGCATCCAAAAGGCATTGCTAATTTTGCTATAGAATTCACAATT
TATGAATGCACTTAATGGATGATAGATTCAACGAAGTGAAAAAGGCAGAC
ATTTTGTGTCCTTGATAGTTTAGAACCCATACTCTAATTTTTATGAAATC
AATTTTCTCAGTTTGATTTGATTACGTGTAGCTTTGGGTGAAATCATTTC
TATAAAAATTACACCAAGTAGTACATAATAGCTCTATTTTCAATTCAGAA
ATAATTTTTTCCATCAGACTTACAAATATGATTTATAATTAACATTAAGA
ATTACTATTTGGTTAGAGAATAATCTACTCATTGCTATATGTTTGAATTG
TAGAAAATTTTTTTAAAAGTAAATAATTGAATATTAAAAATTATAAAGGT
AAAAAGAGAAAATACATATTTGAGTGATTATTTGTTATCTACAGTNGTCA
ATTTATTTTTAAGCAGATGTACTGTACTTAGGAAATTTAANACAAGACCT
CATCATCAATATCATTGTACTGCAAGGATCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_g05.g1 MSMg01no455_g05.g1 CHROMAT_FILE:
MSMg01no455_g05.g1 PHD_FILE: MSMg01no455_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:53 2005
         (568 letters)



>mm_chr4_19235882_19236849
          Length = 968

 Score = 1083 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacacaggactaacctggagatactgtcaggccaaggaaaaatatgctgaaagattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctcacacaggactaacctggagatactgtcaggccaaggaaaaatatgctgaaagattgt 618

                                                                       
Query: 61  ttattacatgataaaagtttcacattgtttatatgcctcgtaataataacaaaacacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttattacatgataaaagtttcacattgtttatatgcctcgtaataataacaaaacacagg 558

                                                                       
Query: 121 atcaactctcggcatccaaaaggcattgctaattttgctatagaattcacaatttatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atcaactctcggcatccaaaaggcattgctaattttgctatagaattcacaatttatgaa 498

                                                                       
Query: 181 tgcacttaatggatgatagattcaacgaagtgaaaaaggcagacattttgtgtccttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgcacttaatggatgatagattcaacgaagtgaaaaaggcagacattttgtgtccttgat 438

                                                                       
Query: 241 agtttagaacccatactctaatttttatgaaatcaattttctcagtttgatttgattacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtttagaacccatactctaatttttatgaaatcaattttctcagtttgatttgattacg 378

                                                                       
Query: 301 tgtagctttgggtgaaatcatttctataaaaattacaccaagtagtacataatagctcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgtagctttgggtgaaatcatttctataaaaattacaccaagtagtacataatagctcta 318

                                                                       
Query: 361 ttttcaattcagaaataattttttccatcagacttacaaatatgatttataattaacatt 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 317 ttttcaattcagaaataattttttccatcagacttacaaatataatttataattaacatt 258

                                                                       
Query: 421 aagaattactatttggttagagaataatctactcattgctatatgtttgaattgtagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagaattactatttggttagagaataatctactcattgctatatgtttgaattgtagaaa 198

                                                                       
Query: 481 atttttttaaaagtaaataattgaatattaaaaattataaaggtaaaaagagaaaataca 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 attttttaaaaagtaaataattgaatattaaaaattataaaggtaaaaagagaaaataca 138

                                       
Query: 541 tatttgagtgattatttgttatctacag 568
           ||||||||||||||||||||||||||||
Sbjct: 137 tatttgagtgattatttgttatctacag 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)