BAC Information

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BAC

Clone NameMSMg01-455H15
Chromosome4 (Build37)
Map Location 68,925,729 - 68,926,362
singlet/doubletsinglet
Overlap genenone
Upstream geneTcp1-ps1, Dbc1
Downstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455H15.T7 (MSMg01no455_h15.b1)MSMg01-455H15.TJ (MSMg01no455_h15.g1)
ACCAG542007AG542008
length729736
length of high quality
(start - end)
636 (71 - 706)636 (74 - 709)
definitionCHROMAT_FILE: MSMg01no455_h15.b1 PHD_FILE: MSMg01no455_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:00 2005CHROMAT_FILE: MSMg01no455_h15.g1 PHD_FILE: MSMg01no455_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAGAGGATCCGCGGA
ATTCTTTGTTCCCCTCTGAGCCCCATTTTTTAATGGCGTTATTTGTTTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCCAATTTGGGATAGGTAAAGATCTTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATG
AGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTACCCATATCTTCCAGGCTTTTCACTACTT
TCTCCCCTATAAGTTTGAGTGTCTCTGGTTTTATGTGGAGTTACTTAATC
CACTTAGTTTTAACCTTAGTACAAGGAGATAGAAATGGATCAATTCACAT
TCTTCTATGTGATAACCTCCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTC
TACTTGTCTGTCACTATACCAGTACCATGTAGTTTTTATCACAATTGCTC
TGTAGTACAGTTTTAGGTCCAGCATGGTGATTCCACCAGAGGTTCTTTTA
TCCTTGAGAAGAGTTTTTGCTATCCTCGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGCGCATGTTGAGATCAGAAGATAAC
TTGAGGTAATTTGATCTCTCCTTCAATGATATTGGACTCAGGAAAATGAC
CTCAGTCTGTCATTCTTTATGGCAAGCAATTGTACTTGCTGAGCCATCTT
GCCAGCCACAGAATTAGATGTTAAGCTGAGTTCAAGACACAAAGCTGTTA
TGACCTGTGCTAACTGCTGTTTATGTGTACATAGCAGGCCTCAGCTTTGA
TTTCCCCCGCAAAGAAGGCATCTGAGTGACTACACAGTCTACAGCTCTAG
GTGGAACTGGAGTGGGCTAAGGTCAGAAGAGATTTATTCCAATTCTACAT
CAGAAGACAAAAACTTTAATTAAACGAGAGAAGAAAAAACTGCCAGAGTC
TGAGCAGGGAGTCCACACCATCTGACAGTTTCAATTTTCACTTACAGCTT
ACTTTCCGGATTGATATCCTTCTCAGTGCCTGCTGAAGAAAACCATTGGC
TCCTATAAATCACCTTCTAAACTCACCCGCAACTGCTGTTTTAACCCACA
TTTTGACAGAAAGGTAGACAAAGTTAATAATGACAATATCTCATCATTGA
CCCATCCCTGTGTGTCATAATCTATGCAAAGTGGTTGAACCATCATTTCT
CCCTAACACCAACAAACCTCTATTGAACAGAGAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_h15.g1 MSMg01no455_h15.g1 CHROMAT_FILE:
MSMg01no455_h15.g1 PHD_FILE: MSMg01no455_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:00 2005
         (636 letters)



>mm_chr4_68925527_68926562
          Length = 1036

 Score = 1181 bits (611), Expect = 0.0
 Identities = 629/635 (99%), Gaps = 1/635 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgcgcatgttgagatcagaagataacttgaggtaatttgatctctccttcaatgatattg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgcgcatgttgagatcagaagataacttgaggtaatttgatctctccttcaatgatattg 262

                                                                       
Query: 62  gactcaggaaaatgacctcagtctgtcattctttatggcaagcaattgtacttgctgagc 121
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gactcaggaaa-tgacctcagtctgtcattctttatggcaagcaattgtacttgctgagc 321

                                                                       
Query: 122 catcttgccagccacagaattagatgttaagctgagttcaagacacaaagctgttatgac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 catcttgccagccacagaattagatgttaagctgagttcaagacacaaagctgttatgac 381

                                                                       
Query: 182 ctgtgctaactgctgtttatgtgtacatagcaggcctcagctttgatttcccccgcaaag 241
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct: 382 ctgtgctaactgctgtttatgtctacatagcaggcctcagctttgatttcccctgaaaag 441

                                                                       
Query: 242 aaggcatctgagtgactacacagtctacagctctaggtggaactggagtgggctaaggtc 301
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 442 aaggcatctgagtgactacacagtctacagctctaggtagaactggagtgggctaaggtc 501

                                                                       
Query: 302 agaagagatttattccaattctacatcagaagacaaaaactttaattaaacgagagaaga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaagagatttattccaattctacatcagaagacaaaaactttaattaaacgagagaaga 561

                                                                       
Query: 362 aaaaactgccagagtctgagcagggagtccacaccatctgacagtttcaattttcactta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaaaactgccagagtctgagcagggagtccacaccatctgacagtttcaattttcactta 621

                                                                       
Query: 422 cagcttactttccggattgatatccttctcagtgcctgctgaagaaaaccattggctcct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagcttactttccggattgatatccttctcagtgcctgctgaagaaaaccattggctcct 681

                                                                       
Query: 482 ataaatcaccttctaaactcacccgcaactgctgttttaacccacattttgacagaaagg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ataaatcaccttctaaactcacccgcaactgctgttttaacccacattttgacagaaagg 741

                                                                       
Query: 542 tagacaaagttaataatgacaatatctcatcattgacccatccctgtgtgtcataatcta 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tagacaaagttaataatgacaatatctcatcattgacccatccctgtgtgtcataatcta 801

                                              
Query: 602 tgcaaagtggttgaaccatcatttctccctaacac 636
           ||||||||| |||||||||||||||||||||||||
Sbjct: 802 tgcaaagtgtttgaaccatcatttctccctaacac 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)