Query= MSMg01no455_m05.b1 MSMg01no455_m05.b1 CHROMAT_FILE:
MSMg01no455_m05.b1 PHD_FILE: MSMg01no455_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:21 2005
(241 letters)
>mm_chr6_58553250_58553891
Length = 642
Score = 366 bits (189), Expect = e-106
Identities = 232/253 (91%), Gaps = 12/253 (4%)
Strand = Plus / Minus
Query: 1 gtccctatcggagtctcaccaccactgccatcttccacactgtccagcatgtcttttgtc 60
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 421 gtccctatcggagtctcaccaccactgccatctttgacactgtccagcatgccttttgtc 362
Query: 61 tcagatctcagtaactcagtacacagatgaccttcccaacactcttccctgcttctgtaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 361 tcagatcttagtaactcagtacacagatgaccttcccaacactcttccctgcttctgcaa 302
Query: 121 agttctcccaggtaatgtcttgggggttgccacc-ccaatttctctccctctcaagacac 179
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 301 agttctcccaggtaatgtcttgggggttgccacctccaatttctctccctttcaagtcac 242
Query: 180 cattagtaacccaattcttcctcgagacccctcaagaag-----------ctgcacacca 228
|||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct: 241 cattagtaacccaattcttcctggagacccctcaagaagctctcaagaacctgctcacca 182
Query: 229 ctccctcactgtg 241
|||||||||||||
Sbjct: 181 ctccctcactgtg 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space: 146856
Effective search space used: 146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no455_m05.g1 MSMg01no455_m05.g1 CHROMAT_FILE:
MSMg01no455_m05.g1 PHD_FILE: MSMg01no455_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:22 2005
(607 letters)
>mm_chr4_146083559_146084565
Length = 1007
Score = 986 bits (510), Expect = 0.0
Identities = 586/616 (95%), Gaps = 9/616 (1%)
Strand = Plus / Plus
Query: 1 tctctctgaaaggcaaccttaaatccaaccagaatatgttttactgtaatttatttttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctctctgaaaggcaaccttaaatccaaccagaatatgttttactgtaatttatttttgt 251
Query: 61 ctgttgctttcataaaacaccatgttcaaggaaactaatagaagaaaaagactactttgc 120
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 252 ctgttgctttcataaagcaccatgttcaaggaaattaatagaagaaaaagactactttgg 311
Query: 121 gtaatgcttccagaggatagccatcaaccatggcagggaagactgatagaacacagccat 180
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||
Sbjct: 312 gtaatgcttccagaggatagccatcaaccatgacagggaggactgatagaacatagccat 371
Query: 181 gttgttgaagtagaaaggtga--------aaa-atcacatcctcaaccccagtcactaaa 231
||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 372 gttgttgaagtagaaaggtgaaagatctgaaagatcacatcctcaaccccagtcactaaa 431
Query: 232 gaggaagagagaattaagatggcttggatctatctattcttttttctcatagccaacccc 291
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaggaacagagaattaagatgacttggatctatctattcttttttctcatagccaacccc 491
Query: 292 cagtgtcatactttattcagcaatgttccaacaactaaattcctcaaaacattgtgaccc 351
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cagtgtcatactttattcagtaatgttccaacaactaaattcctcaaaacattgtgaccc 551
Query: 352 actgaggatccaattttaaaagataaaagtattatccagtaggagattgattctttcata 411
||||||||||||| |||||| |||||||||| |||||| | ||||||| |||||||||||
Sbjct: 552 actgaggatccaactttaaacgataaaagtactatccaatgggagatttattctttcata 611
Query: 412 cctatataatcagccttctaatatccttgtgctttttaaattgattttgatatcaatgta 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cctatataatcagccttctaatatccttgtgctttttaaattgattttgatatcaatgta 671
Query: 472 gaaaataaagctctaatttcttgtatgggtttcctgttcgtttgtttgtttgtaaaacag 531
||||| ||||| |||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 672 gaaaacaaagccctaatttcttgtatgggtttcctgctcttttgtttgtttttaaaacag 731
Query: 532 ggtcccacactctagtcctgactttcacatgtcctgatatagagaccagaatggctttta 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggtcccacactctagtcctgactttcacatgtcctgatatagagaccagaatggctttta 791
Query: 592 ggtcacatccctgaga 607
||||||||||||||||
Sbjct: 792 ggtcacatccctgaga 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
