BAC Information

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BAC

Clone NameMSMg01-455M08
Chromosome4 (Build37)
Map Location 98,620,702 - 98,620,940
singlet/doubletsinglet
Overlap geneDock7
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1
Downstream geneAngptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455M08.T7 (MSMg01no455_m08.b1)MSMg01-455M08.TJ (MSMg01no455_m08.g1)
ACCAG542232AG542233
length719877
length of high quality
(start - end)
239 (324 - 562)184 (134 - 317)
definitionCHROMAT_FILE: MSMg01no455_m08.b1 PHD_FILE: MSMg01no455_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:22 2005CHROMAT_FILE: MSMg01no455_m08.g1 PHD_FILE: MSMg01no455_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAACAGGATCC
GCGGAATTCAGTTCACAAACACACAGCAACAGAATGCCCACAGCTAGCAC
ATGTGGGCAAAGCATTGGCATAAGAAATCTGGTCAAGTCCATCTATTAGT
GTCTTTAACTAACTAAAGCATTACCTACCTCCCAGCCAGTGCTCTGTGTA
ATAAAAAGTAAAAAAAGGGCAAGTCATAAAAAAAAAACTGTTCAAAAGAA
CAAAGAGGCCAAAGGAAGGTCAGTTACACGGTACGTTACCACAAGTTCTT
CTCAGAGGATAACTAAGATTTTAAACAGAACATATTCTATCATCTAAGAC
CGAGAGAAATTTTATAACACACTTGTTCAAAACTCAATTCCTAAAATTTT
GCCTTTGAAAAGCTAAGCTTTGAAAGTAAGAGTACTGTTTAGTCTAAGTA
CGCATTTTAGGGCACGGGAACCTGCCACTTATTCTGCCTGTGTCTGACTC
AGGTCTCTGACTACTAGGAGCTGGTTCCACGGAAATATCCAGGTTAAACA
GGACACACACTGCAGTTGTGACAAATGACAGGAACTGAATCACACGGATG
AAATTCTCTGGGAAACCACTAGCAGTCAGGGCTACGTGTTGCAGATTGGA
TGCGTATGAATGGCATCACAGGTTTCCTCAGGATGATGAAGTTTCTCAGA
ACATGGGCCTAATTGGATA
CCTTTTTCCTTTCTATTCCTTTTTCTTCAAGGTTTTNNACACCCTTTTTT
TCCTCCTCTATGCTAGGGGAAGGCCGGGNGGCCGCCAGGCAAAACAAATT
TAGGNGACACTATATATGGCACACAACAGGAATTCATTCGCATCCTTATA
ACAGGCTCCATACCATCTTCTTCGTTAGGCATTTTGGCCATTCACATATG
TGGTTGATTGAAGTCACCCCTCACCATGGATAAACATGGACCTGCCTAAG
GTCAGACCACGCCTCTCTCTCTTTCTGCTTTCCATCTCTCTACATCTTTT
TCATTATTAAATTAAAAACAAGGTGTGTGTTGTCTCTGTGCATGCATTCG
TGTGTGTGTGCGCGTGCGTTTTTTTTTTTGTCTGAATGTGTGTGTGTGAC
TGTGTGTGCACTGTTTTTTTCTTTCTCTCATTTTTCTTCCATCATCCGCA
TCGTTTTCTTCTTTTTTTTTTTAATGTTTTCTCCCTCGTTGTTTTTTATT
TTCTTCTCACCCCCCTACTTCCTTCCTTTTCTCTCTCCCTTCCCTTTATC
TTTTCCTTTTTTCCTCTTTTTCATCATCCTTATTTTTTCCCCTCGCCCCT
CACTATTCACCTTTTTTTTTTTTATCTTTCCTCCTTCTTATATTTTTCAT
TTTTTATATCTCACCATATATTTTCCTCTTTCCTTGCCTCTTGTTTTCCT
TTCCGTCTTTTGCTTCCTCATTTTGTTATTATGTCCCCTTTTTCCCCAAT
TTCCTCCTTACTACCCCCACCTTTTCCTTTTCTCCTCGCCGCGCCTTTAC
TGTTTCCCTATCTCCCTTAATTCTTCTCGAGCATTCATCCTTCACTTCCT
TCCTTATTCTCTTCTCCGCCGTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_m08.b1 MSMg01no455_m08.b1 CHROMAT_FILE:
MSMg01no455_m08.b1 PHD_FILE: MSMg01no455_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:22 2005
         (239 letters)



>mm_chr4_98620502_98621140
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaacatattctatcatctaagaccgagagaaattttataacacacttgttcaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagaacatattctatcatctaagaccgagagaaattttataacacacttgttcaaaac 260

                                                                       
Query: 61  tcaattcctaaaattttgcctttgaaaagctaagctttgaaagtaagagtactgtttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaattcctaaaattttgcctttgaaaagctaagctttgaaagtaagagtactgtttagt 320

                                                                       
Query: 121 ctaagtacgcattttagggcacgggaacctgccacttattctgcctgtgtctgactcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaagtacgcattttagggcacgggaacctgccacttattctgcctgtgtctgactcagg 380

                                                                      
Query: 181 tctctgactactaggagctggttccacggaaatatccaggttaaacaggacacacactg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctgactactaggagctggttccacggaaatatccaggttaaacaggacacacactg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)