Query= MSMg01no455_o10.b1 MSMg01no455_o10.b1 CHROMAT_FILE:
MSMg01no455_o10.b1 PHD_FILE: MSMg01no455_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:32 2005
(589 letters)
>mm_chr4_85982337_85983324
Length = 988
Score = 1054 bits (545), Expect = 0.0
Identities = 578/589 (98%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 1 taaatacctgagattataagtggggagctacaaaatctttgctacataattcactgcaaa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatacctgagattacaagtggggagctacaaaatctttgctacataattcactgcaaa 260
Query: 61 gacaagaagcaaagccctttgacctgactcctggtttgtcaaaaacaaaaacgaaaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaagaagcaaagccctttgacctgactcctggtttgtcaaaaacaaaaacgaaaaaac 320
Query: 121 cacctccctgctctttactccaccaagaatcgggtcgtgatcagggtccttgccggtgct 180
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 321 cacctccctgctctttactccaccaagaatcaggtcgtgatcaggatccttgccggtgct 380
Query: 181 gaccctttttgctttgcttgcccagtgttccaggacctgtggaggagggattcagaaacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccctttttgctttgcttgcccagtgttccaggacctgtggaggagggattcagaaacg 440
Query: 241 tgttgttctctgcaagcagcgtatggctgacggcagcttcctggagcttccagagacctt 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgttctctgcaagcagcgtatggctgacggcagcttcctggagcttccagagacctt 500
Query: 301 ctgttcagcctccaaaccaacctcccaccaagggtgcaagaaagatgactgccccagtga 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgttctgcctccaaaccaacctcccaccaagggtgcaagaaagatgactgccccagtga 560
Query: 361 gtggcttctctcagagtggtcagaggtaggttttgcttctcttcttaggatgagagaacg 420
||||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||||
Sbjct: 561 gtggcttctctcagagtggtcagaggtaggtat-gcttctcttctcagggtgagagaacg 619
Query: 421 cataggacagaaatcatcccacacagtagaaaagagaccaaaaagctctcctgacagtgt 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 cataggacagaaatcatcccacacaatagaaaagagaccaaaaagctctcctgacagtgt 679
Query: 481 ggaatggcatattgtaatgccatcggtctatatggtaggatgcataatatctaggctatg 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 ggaatggcatattgtaatgccatcagtctatatggtaggatgcataatatctaggctatg 739
Query: 541 ggctgattttattatggggacctaggctatgcagccagcccttacctaa 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggctgattttattatggggacctaggctatgcagccagcccttacctaa 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_o10.g1 MSMg01no455_o10.g1 CHROMAT_FILE:
MSMg01no455_o10.g1 PHD_FILE: MSMg01no455_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:32 2005
(555 letters)
>mm_chr4_86128854_86129810
Length = 957
Score = 1011 bits (523), Expect = 0.0
Identities = 548/557 (98%), Gaps = 2/557 (0%)
Strand = Plus / Minus
Query: 1 catgtcttgggtggcaacccaaattccatttcaattgagttatccttaattcagaagcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 catgtcttgggtggcaacccaaattccatttcaattgagttatccttaattcagaagccc 698
Query: 61 gcttctggtgtgtgggacgagcagggatctaggcccagcgacatacagaactttggcttt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gcttctggtgtgtgggacaagcagggatctaggcccagcgacatacagaactttggcttt 638
Query: 121 agctccttcctttccaagactgcctcattttgcttttctgtttttttagtgaacagaa-- 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agctccttcctttccaagactgcctcattttgcttttctgtttttttagtgaacagaaag 578
Query: 179 agtctggcaaaggctggttttagctgcctcatctggcacaggctggtgactgccttcttt 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agtctggcaaaggctggttttagctgcctcatctggcacaggctggtgactgccttcagg 518
Query: 239 ctgaagctgtgactcacaagcagttcacggaaaatgaaggagcaaagacttagctagggc 298
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 517 ctgaagctgtgactcacaagcagttcatggaaaatgaaggagcaaagacttagctagggc 458
Query: 299 catttcttctcccacctgctggcgctgtcccagaaacctattggctgggccaactctagt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 catttcttctcccacctgctggcgctgtcccagaaacctattggctgggccaactctagt 398
Query: 359 cctgttgagtagtttaaacatggtttcttccaggctacatggaatggtgacagatgttag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cctgttgagtagtttaaacatggtttcttccaggctacatggaatggtgacagatgttag 338
Query: 419 cttctgcctgagcaggatcggaggaactgaggatagaggagagataatgatgtataattg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cttctgcctgagcaggatcggaggaactgaggatagaggagagataatgatgtataattg 278
Query: 479 gaatcccgggtggttgtactagcatctactggctgcagggatgatgctgcgatccagctt 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaatctcgggtggttgtactagcatctactggctgcagggatgatgctgcgatccagctt 218
Query: 539 tctagctccgctgaagg 555
|||||||||||||||||
Sbjct: 217 tctagctccgctgaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 957
Length adjustment: 10
Effective length of query: 545
Effective length of database: 947
Effective search space: 516115
Effective search space used: 516115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
