Query= MSMg01no455_o14.b1 MSMg01no455_o14.b1 CHROMAT_FILE:
MSMg01no455_o14.b1 PHD_FILE: MSMg01no455_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:33 2005
(543 letters)
>mm_chr4_92307925_92308867
Length = 943
Score = 951 bits (492), Expect = 0.0
Identities = 528/540 (97%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgtgtctttgcctcagctgggcccaggcactcccagttttattggaacatgtt 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcctgtgtctttgcctcagctgggcccaggcactcccagttttgttggaacatgtt 264
Query: 65 gtgttccaatcatgagtaatcctaagatcctggccattctagggctccttagtgggtaga 124
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 gcattccaatcatgagtaatcctaagatgctggccattctagggctccttagtgggtaga 324
Query: 125 gagtcctctggggactgtgggactgtctacttagttcgggtccaagtttgttcagcactg 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 gagtcctctggggactgtgggactgtctacttagttcgggtccaagtttgtccagcactg 384
Query: 185 gcactgattggaaggaacccaagccactctattcttttgtttttaatagtttatgtttat 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 gcactgattggaaggaacccaagccactctattcttttgtttttaatagtttatgtatat 444
Query: 245 ataagtggtatatacctttgtgtactatatgcatacatacaccctcactgtactgggttc 304
|||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 ataagtcgtatatacatttgtgtacaatatgcatacatacaccctcactgtactgggttc 504
Query: 305 atgtccaataatagttacttatgtcaaaattgggaattgaattcagcccttatacttttg 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggccaataatagttacttatgtcaaaattgggaattgaattcagcccttatacttttg 564
Query: 365 caataaacaacttgacctgatgagcaatcttgactgtccataaattcctaatatatttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caataaacaacttgacctgatgagcaatcttgactgtccataaattcctaatatatttta 624
Query: 425 tactttgaattctagactttactatatgatattagttactcataactaaatttttatatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tactttgaattctagactttactatatgatattagttactcataactaaatttttatatg 684
Query: 485 tctgtgtgtttag-ataacattacaatctcatgtttttaccttagactatgtttgacttc 543
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctgtgtgtttagga-aacattacaatctcatgtttttaccttagactatgtttgacttc 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_o14.g1 MSMg01no455_o14.g1 CHROMAT_FILE:
MSMg01no455_o14.g1 PHD_FILE: MSMg01no455_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:33 2005
(521 letters)
>mm_chr4_92458788_92459708
Length = 921
Score = 984 bits (509), Expect = 0.0
Identities = 518/521 (99%)
Strand = Plus / Minus
Query: 1 taatgttctgttaggttgatgtagagttctcaggacaaatgttcattattggtgagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 taatgttctgttaggttgatgtagagttctcaggacaaatgttcattattggtgagaaaa 662
Query: 61 tatgtggtcatcatagtggggaatatttaattaaaaatcacccaatgcataaaactgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tatgtggtcatcatagtggggaatatttaattaaaaatcacccaatgcataaaactgggt 602
Query: 121 caattcaacaggaaacctcactggtaacaatgatttttttatgcttattttgttttcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caattcaacaggaaacctcactggtaacaatgatttttttatgcttattttgttttcctt 542
Query: 181 catagcattcaaattctatatgtcttgcacatatcctatttaatgcaaagtgttttcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 catagcattcaaattctatatgtcttgcacatatcctatttaatgcaaagtgttttcata 482
Query: 241 ttttttaactgttttgaagggatacattgtaaattcatggcttcacctgttttgtttgca 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 481 ttttttaactgttttgaagggatacagtgtaaattcatggcttcacctgttttgtttgca 422
Query: 301 acccttttgtcaaattataatatcagttgtcattaccaggagccaatgaggaaagaggta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 acccttttgtcaaattataatatcagttgtcattaccaggagccaatgaggaaagaagta 362
Query: 361 actcagtttatgcctggtataatattctgctatttgagtcgaaaagattctgcccaattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actcagtttatgcctggtataatattctgctatttgagtcgaaaagattctgcccaattg 302
Query: 421 ctaagctgcatctattccagaataggttattggatatacctgaaagcatctcacagccaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 ctaagctgcatctattccagaataggttattggatatacctgaaagcatctcacagccca 242
Query: 481 aaacatatccattaaaggaaagtaaaattcaataagcagag 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaacatatccattaaaggaaagtaaaattcaataagcagag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
