BAC Information

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BAC

Clone NameMSMg01-455P07
Chromosome4 (Build37)
Map Location 96,682,453 - 96,682,608
singlet/doubletsinglet
Overlap genenone
Upstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455P07.T7 (MSMg01no455_p07.b1)MSMg01-455P07.TJ (MSMg01no455_p07.g1)
ACCAG542372AG542373
length715690
length of high quality
(start - end)
321 (322 - 642)456 (49 - 504)
definitionCHROMAT_FILE: MSMg01no455_p07.b1 PHD_FILE: MSMg01no455_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:36 2005CHROMAT_FILE: MSMg01no455_p07.g1 PHD_FILE: MSMg01no455_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCATTAGCAGAATACCTAATGGCCAAGAAGCACCTGAAAAAA
TGTTTAACATCCTTAATCATAAGGGAAATGCAAATCAAAACAACCCTAAG
ATTCCACCTCATACAAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACA
GCAGATGTTGGCAAGGATGTGGAGAAAGAGGAACACTTCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCT
CAGAAAATTGGACATATTTCTACTGGAGGATCCAGCAGTACCTCTCCTGG
GCATATATCTAGATGTTCCGACCGGTAAGAAGGACACATGCTCTACTGTA
TTCATAACAGCCTTATTTATAATAGCCGGAAGCTGGAAAGAACCCAGATG
TCCCGCAACAGAGGAATGGATACATAAAATGTGGTACAATTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAA
GAACTCACATGATATGAACTCACTGATAAGTGGATATTAGTCCAGAAACT
TAGAATACCCATGATACAAGATACAATCTGTAAAACACATGAAACTCTAG
AAAAACTAGACCAAA
CCTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG
AGGAGTCACTCACCTGATGGTGTGGGGCCACTCTGTTATCTACAACAGAG
GAGAAGTGGCAGGGGTCATGCATAGGCAACACTGTGAGTGGTAGTAATGA
TGGTCTAAAAAATGTTGGGGTATTTACAGAGAATATAAAGTGAAAGTGAT
TTTTTTTATTTTTTTCCCATTTTTATTAGGTATTTACCTCATTTACATTT
CCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTAC
ACACCCACTACCCCTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATA
TAAAGTTTGCTTGTCCAATGGGCCTTTCTTTCCAGTGATGGCCGACTAGG
CCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGT
TAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTATCTCCT
TGGGTACTTTCTCTAGCTCCTCCATTGGTAGCTCTGTGATCCACCCATTA
CCTGACTGTGAGCATCCACTTCTGTGTTTGCTATTTTCCGGCATACCCTC
TCATAAAACAGCTAACTCTGGTTTCCTTTCTTAAAAATCTTGCTAGTATT
TGCCCCGCTGGCCAGTTTTTGGATGTTTGATAAATGGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_p07.g1 MSMg01no455_p07.g1 CHROMAT_FILE:
MSMg01no455_p07.g1 PHD_FILE: MSMg01no455_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:36 2005
         (456 letters)



>mm_chr4_96682253_96683108
          Length = 856

 Score =  286 bits (148), Expect = 2e-81
 Identities = 154/156 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggagtcactcacctgatggtgtggggccactctgttatctacaacagaggagaagtg 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 356 agaggagtcactcacctgatggtgtggggccactctgttatctataacagagcagaagtg 297

                                                                       
Query: 61  gcaggggtcatgcataggcaacactgtgagtggtagtaatgatggtctaaaaaatgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gcaggggtcatgcataggcaacactgtgagtggtagtaatgatggtctaaaaaatgttgg 237

                                               
Query: 121 ggtatttacagagaatataaagtgaaagtgattttt 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggtatttacagagaatataaagtgaaagtgattttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)