BAC Information

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BAC

Clone NameMSMg01-456F01
Chromosome4 (Build37)
Map Location 8,039,630 - 8,039,892
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456F01.T7 (MSMg01no456_f01.b1)MSMg01-456F01.TJ (MSMg01no456_f01.g1)
ACCAG542647AG542648
length744826
length of high quality
(start - end)
324 (51 - 374)163 (82 - 244)
definitionCHROMAT_FILE: MSMg01no456_f01.b1 PHD_FILE: MSMg01no456_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:05 2005CHROMAT_FILE: MSMg01no456_f01.g1 PHD_FILE: MSMg01no456_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAACTATCTCAGTTCGTTCATCCTCAGTTCCAAAGATCATC
CAAAGTTCATCTGGCGGGCTGCCAGATTCTTGCCACATCTTTCCCATTGA
TGTTCTCAGGTTGGGATCTTTCCACCTCACCTTTTTAACTATATCTCCCT
TCGTTAGCTTTCAAGTTCTAGACCACTTCCTTCAAAAGACCTTCCACACC
TCAAACTGTCCATTCACTTTTTTGAACAAGAAGTCTACTCTATTCACATG
ACTTTAAGAATCTGGATTCTAATGGAGTGTGCTTAGAAGAAGGAATGGGT
TTTTGTGAGTGTGTTTGTGAATGGGTGTGTTTATCCCCTTCTTCTCCCTC
TCGTTTTTCTTTTTTTTCTGCTCCCACTTTTGTGTTTTTCTTTTTTCTGT
CTGTTTTCTTCTTTTGCCGCTCCCTTTTGGTTCCCTTTTTGTCCTTCTTT
CTTCACCTTTCCTTTTTCACTTTTCTCTACTTTCTATCGCCGGCAGTTGT
TTTATTTTCCTCCCCCTCCCTTTTTCTTTTTCTTCTCTTTCTTCACATTT
TCTCCCGCTTTTTTGCCCCCTATTTTTTTTCTCCTTTTCGCCTATTCTTC
ACCCACTTCTTCGCCCTTATATATCCCCTCTTTTATTATTCTTTCTTTTC
TTTATTATTATCTTATTACCACCTTTCATTCTCCCTTTCTCATN
TTTTTCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACCCATCTGGT
CCTGGGCTTTTTTTGGTTGGGAGACTAGTAATGACTGCTTTTATTTCTTT
AGGGGATATAGGACTGTTTAGGTCATTAATCTGATCCTGATCTAACTTTG
ATACCTGGTATCTGTCTAGAAATTTGTGCATTTCATCCAGGTTCTCCAGT
TTGTGTTGAGGAGCGCCTTTGCGTACGAGGAGCTGAGGCGGTTGTGTATT
CGCTCACAATTTGTGGACGTGTCTCTTTTTTCATGTCTGATCCGCGTATT
TATTCGATTTCCCCTGTTTTTCTCGATCGATTTTGTTTTTACTTTTCATT
TCCTTTTGCCGTCTTTTTTCTCTAACCGTTTCTGGTTTCTTTTCCCGTAT
TCCCTTTTTCTTCTTTCCTTTTTTTCTCCTTTTTTTCTCTACCCTTTTTG
TTTTCTTCTTCTCTTTTCTTCTCCCTTTTTTCTGTCCTTTTTCTTATTTT
TCCTTTCTCCCCTTCTTTTTTTTCCCCTCTTTCCTCTCCTCCTCTTTTTT
TCCGTCTTTTTTTTTCCCTCCTCTTCTTTTTCTCATCCTTTTTTTTTTCC
TTTTTTTATCCATCCTCTTCTTTCTATACCCTTTTTCTCCTCCTTTTTTA
CCTTTTTTCTTCCTTTTCTTTTCTTTTCCCTTTCTCTCCCTCTTTTTCTC
CGCCTCTCCTCTTTCTTTTCTGTTTTTTTTTTTCTCTCTTCCTTTTTTTT
CTTCTCTCTCTCCCTTTTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_f01.b1 MSMg01no456_f01.b1 CHROMAT_FILE:
MSMg01no456_f01.b1 PHD_FILE: MSMg01no456_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:05 2005
         (324 letters)



>mm_chr4_8039369_8040092
          Length = 724

 Score =  478 bits (247), Expect = e-139
 Identities = 259/263 (98%)
 Strand = Plus / Plus

                                                                       
Query: 62  tggcgggctgccagattcttgccacatctttcccattgatgttctcaggttgggatcttt 121
           ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 262 tggcgggctgccagattcttgccacgtctttccccttgatattctcaggttgggatcttt 321

                                                                       
Query: 122 ccacctcacctttttaactatatctcccttcgttagctttcaagttctagaccacttcct 181
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 322 ccacctcacctttttaactatatctcccttctttagctttcaagttctagaccacttcct 381

                                                                       
Query: 182 tcaaaagaccttccacacctcaaactgtccattcacttttttgaacaagaagtctactct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcaaaagaccttccacacctcaaactgtccattcacttttttgaacaagaagtctactct 441

                                                                       
Query: 242 attcacatgactttaagaatctggattctaatggagtgtgcttagaagaaggaatgggtt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attcacatgactttaagaatctggattctaatggagtgtgcttagaagaaggaatgggtt 501

                                  
Query: 302 tttgtgagtgtgtttgtgaatgg 324
           |||||||||||||||||||||||
Sbjct: 502 tttgtgagtgtgtttgtgaatgg 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)