BAC Information

Click to search

BAC

Clone NameMSMg01-456L12
Chromosome4 (Build37)
Map Location 9,262,869 - 9,263,110
singlet/doubletsinglet
Overlap gene4933402J24Rik
Upstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584
Downstream geneAsph, Gdf6, 4930448K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L12.T7 (MSMg01no456_l12.b1)MSMg01-456L12.TJ (MSMg01no456_l12.g1)
ACCAG542955AG542956
length734754
length of high quality
(start - end)
242 (317 - 558)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no456_l12.b1 PHD_FILE: MSMg01no456_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:38 2005CHROMAT_FILE: MSMg01no456_l12.g1 PHD_FILE: MSMg01no456_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAACATGATCCGCGGAA
NNCTTTCTTACACAAGCTTTCTGGCACTGTAACTCGGAAACAGTGTACTC
AGTGAGCCACATCGCTCTGAGTCTTCGAGCTGTAAGGTCACACGCATCTC
GAGCTGTCACTGAGGAGTGTGTCACTGAGGAGTGTGTCACTGAGGAAGGT
GTCACTGAGGAGTGTGTCACTGAGGAGTGGCAGCAGGGAGATTATGGCAA
CTTAGAAAGCAGCACACAAGTTGCATTCATTATGAAGACCGTGAGGCTAG
GCCATGANGTTAGNATAGTAATACTCTCTGTGGCTTCTCTGTGCTGTCTC
ATGAACACATCGATTGCTGTTGGTTCCGAGGCTTCTGATTAAGAAGGCCA
GATGCCTTGAAAAGGAGACATGACAAACTGACTTTGTAAACTCTATTCAG
ATGGCAGAGTCTCTAAGTTCAGAGACTATTTATTCTTACTGGGGGAATTA
CTCACAGTTTGGAGGGCTGAGATATTTAGTTATAGACAACTAATTTTAGA
GCCTGAGTTTCTCTTGATTTTTGGATCTTGTGACTCTTCCAGAAAGTATT
GATCTCTTTACTGAGGACAAAACTGTGGAGATTTTTGTTTCTTAAGGCAA
CTTTTCTGATCAATTATAATACTGGAAACGGGATACCATAATACTCCTCT
GCTTCATTACTGGTGGGCCTTCCCCGTACTTTCT
NAAGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGAAATTCTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAGATGCAA
ATCAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCATATTTTTGTACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACCATATGTACTCACTGATAAGT
GTATTTTATTCCTTAACCTAGGATACCCAAGAAATTAGATACCATTTCCT
AACCCCATGATACTTTTGAAAAATGGAGATTGTAGCGTGGACTCCATTGC
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l12.b1 MSMg01no456_l12.b1 CHROMAT_FILE:
MSMg01no456_l12.b1 PHD_FILE: MSMg01no456_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:38 2005
         (242 letters)



>mm_chr4_9262669_9263310
          Length = 642

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaatactctctgtggcttctctgtgctgtctcatgaacacatcgattgctgttggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agtaatactctctgtggcttctctgtgctgtctcatgaacacatctattgctgttggttc 260

                                                                       
Query: 61  cgaggcttctgattaagaaggccagatgccttgaaaaggagacatgacaaactgactttg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cgaggcttctgattaagaaggccagatgccctgaaaaggagacatgacaaactgactttg 320

                                                                       
Query: 121 taaactctattcagatggcagagtctctaagttcagagactatttattcttactggggga 180
           |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 321 taaactctattcagatggcagaatctctaagttcagagcctatttattcttactggggga 380

                                                                       
Query: 181 attactcacagtttggagggctgagatatttagttatagacaactaattttagagcctga 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 attactcacagtttggagggctgagatatttagttatagacaactgattttagagcctga 440

             
Query: 241 gt 242
           ||
Sbjct: 441 gt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)