BAC Information

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BAC

Clone NameMSMg01-456M01
Chromosome4 (Build37)
Map Location 33,653,905 - 33,654,040
singlet/doubletsinglet
Overlap genenone
Upstream geneBach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456M01.T7 (MSMg01no456_m01.b1)MSMg01-456M01.TJ (MSMg01no456_m01.g1)
ACCAG542981AG542982
length841765
length of high quality
(start - end)
136 (46 - 181)310 (79 - 388)
definitionCHROMAT_FILE: MSMg01no456_m01.b1 PHD_FILE: MSMg01no456_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:40 2005CHROMAT_FILE: MSMg01no456_m01.g1 PHD_FILE: MSMg01no456_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTTTTCCTCAAGGATGTTTCAAACTCTAGGCCTGAGAAAATAGC
ACTGTCTGTGGTCTGAGTGTGACCTTCTCAGAACCGGGGTTACTTGCCAA
AAATGATTGCAGAGTTCTCCGTTAGACGTATAAGCAGAGGGGAAATGAGG
TGTGGTATGATTGGATTGCCCCTCCCTTCCGTGCCTCCGTTTTATTTTTT
CGCTTTCGCTCCTTGGGTTGTGTTTCTCTTTGTTCTTTCTTTTATCCTTC
CCCCTCTTTTTTTTTTTTTTCCACGCCTTTCTCTTCTTCCCACCACTTTT
CTCTTTTTATATTCCCTTTTTCTCTTTTTTTTGTATTGTCCCTTCCCCTC
CTCTCGCCCCTTTTCTTTGCTTCTCCTCTTTGTTCCTTTTATTCTCTTTT
TTCTCCCCCCAGCCTCTTTTTTTTTCTCTCTTTTTCCGTTCTTCTTTTTT
CTTTCCTTCTCGTTGTTTTTTTTATTTTGTATATACGTTCCTCCTCGCTT
TAGTCTCCTTTCCTTTTTTCCTCTCCTTTTCCCCTTGTTTCACTCCATGC
CCATATCTTACTGACCTCCTATCCCTCATTCTCCGTTTTTCCCCCCTCTT
TTCTCCATTTTCTTATTTTTTTTATCGCCCCCCGTTTATGTTCTGTCTCT
TGTTGTTTGCCTCCTCTCTCTTCCCTTTTATTTTTACCATCTATTTATTT
TTTTCTTGCGCCTCTTTTCTCTCCCCTTTCCCTTTTCTCCCGTATATCAT
TACTTGTGTTTCCCCCCCTATTTCTTTTTTCCTCTCCCCTG
TCTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCATATTATTGGACATAGTACTACTGGAGGA
TCCCGCAATATATCTCCTGGGCATCTATCCAGAAGATGTTCCAACTGGTA
AGAAAGACACATGCTCCACTATGTCCATAGTTGCCTTATTTATCATAGCC
ATTAAGTTGTTAAGAACCCTTATGCTCCTCCTCAGAGGAATGTATATATA
AAACGCGTGATCATTTACACACGTTGCACTATTCTTCAATTTACTATATT
TGACTTCACGATATTTTTTACTTTCTCGTTTGCTATATGAGTCGTTATCC
TGATCGTTTCGAGCTTCTTCATTTTACCGGTTTTTTCCCTTTTTTCTATC
TTTCTATTCTTTTTGCCTCTTCTCTGTCTTTTCCTTGTCAATAATTTTAT
TTACATTACCCCTTACTCCTATATACCCTCATTTATTCATTTCTTTTTTA
CCTGTTTCCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_m01.b1 MSMg01no456_m01.b1 CHROMAT_FILE:
MSMg01no456_m01.b1 PHD_FILE: MSMg01no456_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:40 2005
         (136 letters)



>mm_chr4_33653703_33654241
          Length = 539

 Score =  217 bits (112), Expect = 3e-61
 Identities = 130/136 (95%), Gaps = 3/136 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcctttt-ttcctcaaggatgtttca-a-actctaggcctgagaaaatagcactg 59
           |||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 203 ggaattccttttattactcaaggatgtttcacagactctaggcctgagaaaatagcactg 262

                                                                       
Query: 60  tctgtggtctgagtgtgaccttctcagaaccggggttacttgccaaaaatgattgcagag 119
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 tctgtggcctgagtgtgaccttctcagaaccagggttacttgccaaaaatgattgcagag 322

                           
Query: 120 ttctccgttagacgta 135
           ||||||||||||||||
Sbjct: 323 ttctccgttagacgta 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 539
Length adjustment: 8
Effective length of query: 128
Effective length of database: 531
Effective search space:    67968
Effective search space used:    67968
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)