NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACTGTATACCGAATACCAGAGGTGCCTTCCAGCCTCTTGG
ACTGAACTACTACTGGAATCTTAGCCCTTCTTTTCAGAGGCAACAATTGT
TGGATTACCTGGATCACAGCCTGTGATTCACTCTACTATATCCCCTTTCA
TATATATATATAGAGATGCATTCTTACATTTTGCTATATTCAAAAACCTG
TTTAATACAGTGCATTTGTTACTATTTACAATTTATAACCCCATATGGGC
AGCTTCCTGGAAAGGGGGCGGCAGATCTGTGAACTGTAAGCATATCAAGA
CTGTATTAGTGATCAGGAGAACAGAGGAGGAAAAAAGTAGAGAGCATGCG
AAAGGCCACTGGGACCTCAGCACAGAGTGCTGGCTATTCTACTTCATCTT
AGTTAGTAAAATTTGCTTCATGCATGCTCAAAATTGATATGTAGTGTTAA
ATAAAGCCTAGGTAAAATATTAAAGCCTAGATGAAATGTTAAGGTCTAGG
TAAAGTTTAAGGCCTAGGTAACTGTTACTTGGCTAGACTGACATTTTGTT
CTGTTACTAATAATCTAAGGAAACTCTCATATGTTTCTGCTGTTATTAGG
AAACTTTTCAATATGTAGTCTAATGATTACATATTCTCTGATATTCTGTG
GCCTTGGAAACCAATCCCCATAGACATCAGTAGACCTGCTTTGACT

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTCACAAGGGGAAATT
TCCTAAACATAACATCAGTGGCTTAGGCTCTAAGATCAACAATTGATAAA
TGGGACCTCATGAAACTTAAAAGCTTCTGTAAAGCAAAAGACACCACCAA
TAGGACAAATCGGCAACCTACAGATTGGCAAAAGATATTCACTAAGGCTA
CATCCAACAGAGGGCTAATATCCAAAATATATAAAGAATTCAAGAAGTTA
ACCTCCAAAAATCCAATTTAAAAATGGGATATAGAGCTACACAGAGCATT
CACAACAGAAGAATCTGAAATGGCTGAGAAGCACTTAAAGAAATGTTCAA
AGCCCTTAGTCATCAGAGAAATGTAAATCAAAGCAACCCTGAGATTCCAT
CTCATTCTAATCAGAATGCCTAACATCAAAATCTCAAGTGACAGTACATG
TTGGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCTATTGCTGGTGG
GAATGCAAACTGGTACAACCACACTGGGAATCAATCTGTCTGTTACTCTA
AAAATTGGAAATATGTCTATCTGAAGAACCCGCTATAGGACTCTTGGGGA
TGTACCCCCAAAAGACCCCCCCTTACCCACGGGAATTGGGTTCCCCCTAT
TTTTATTGAGCCTTTTTTTTGATTACCAAAAAATGGGTAGGATTCCCGCG
GGGGCCTCCCCCAAAAAAAAN

Query= MSMg01no457_a23.b1 MSMg01no457_a23.b1 CHROMAT_FILE:
MSMg01no457_a23.b1 PHD_FILE: MSMg01no457_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:06 2005
         (545 letters)



>mm_chr4_90368254_90369198
          Length = 945

 Score =  973 bits (503), Expect = 0.0
 Identities = 528/537 (98%), Gaps = 2/537 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tccactgtataccgaataccagaggtgccttccagcctcttggactgaactactactgga 68
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 945 tccactgtataccgaataccagaggtgccttccagcctcttggactaaactactactgga 886

                                                                       
Query: 69  atcttagcccttcttttcagaggcaacaattgttggattacctggatcacagcctgtgat 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 atcttagcccttcttttcagaggcaacaattgttggattacctggatcacagcctgtgat 826

                                                                       
Query: 129 tcactctactatatcccctttcatatatatatatagagatgcattcttacattttgctat 188
           ||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||
Sbjct: 825 tcactctactatatcccctttc--atatatatatagagatgcgttcttacattttgctat 768

                                                                       
Query: 189 attcaaaaacctgtttaatacagtgcatttgttactatttacaatttataaccccatatg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 attcaaaaacctgtttaatacagtgcatttgttactatttacaatttataaccccatatg 708

                                                                       
Query: 249 ggcagcttcctggaaagggggcggcagatctgtgaactgtaagcatatcaagactgtatt 308
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ggcagcttcccggaaagggggcggcagatctgtgaactgtaagcatatcaagactgtatt 648

                                                                       
Query: 309 agtgatcaggagaacagaggaggaaaaaagtagagagcatgcgaaaggccactgggacct 368
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agtgatcaggggaatagaggaggaaaaaagtagagagcatgcgaaaggccactgggacct 588

                                                                       
Query: 369 cagcacagagtgctggctattctacttcatcttagttagtaaaatttgcttcatgcatgc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 587 cagcacagagtgctggctattctacttcatcttagttagtaaaatttgcttcatggatgc 528

                                                                       
Query: 429 tcaaaattgatatgtagtgttaaataaagcctaggtaaaatattaaagcctagatgaaat 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 527 tcaaaattgatatgtagtgttaaataaagcctaggtaaaatattaaagcctagatgaaac 468

                                                                    
Query: 489 gttaaggtctaggtaaagtttaaggcctaggtaactgttacttggctagactgacat 545
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gttaaggtctaggtaaagtttaaggcctaggtaactgttacttggctagactgacat 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)