Query= MSMg01no457_b08.b1 MSMg01no457_b08.b1 CHROMAT_FILE:
MSMg01no457_b08.b1 PHD_FILE: MSMg01no457_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:08 2005
(324 letters)
>mm_chr4_87790433_87791155
Length = 723
Score = 598 bits (309), Expect = e-175
Identities = 321/325 (98%), Gaps = 2/325 (0%)
Strand = Plus / Minus
Query: 1 agaaagcagaggcaggaagatctctggaagtatgaagccagcctagttccaggtctacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agaaagcagaggcaggaagatctctggaagtatgaagccagcctagttccaggtctacat 553
Query: 61 agagagacccgatatcc-aaaaaaaaaaaaaaacactagatcatatgatctctttaatat 119
|||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 552 agagagacccaatatccaaaaaaaaaaaaaaaac-ctagatcatatgatctctttaatat 494
Query: 120 tccaaattcattattaaggtagttgatttcaattaacaacaatggtattactagctatat 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcaaaattcattattaaggtagttgatttcaattaacaacaatggtattactagctatat 434
Query: 180 ttaaagaaagccatcctttcaaacactgcacaggtagaaaatgaaataattataaacata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttaaagaaagccatcctttcaaacactgcacaggtagaaaatgaaataattataaacata 374
Query: 240 ggagaaatataatccatgtaatacacattgagacaactctgcggagcatggcagtattta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggagaaatataatccatgtaatacacattgagacaactctgcggagcatggcagtattta 314
Query: 300 tttttgttgtcagaacttttgtttt 324
|||||||||||||||||||||||||
Sbjct: 313 tttttgttgtcagaacttttgtttt 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space: 224910
Effective search space used: 224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_b08.g1 MSMg01no457_b08.g1 CHROMAT_FILE:
MSMg01no457_b08.g1 PHD_FILE: MSMg01no457_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:08 2005
(248 letters)
>mm_chr4_87562188_87562834
Length = 647
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 6 ttcattttgttggtgtcccccacctcttccaagagctgttaagaatatttggtaaaggta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttcattttgttggtgtcccccacctcttccaagagctgttaagaatatttggtaaaggta 265
Query: 66 atagcaggttgacctgccccatctgactccaccttagctttgaatgccttcccaaaacat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atagcaggttgacctgccccatctgactccaccttagctttgaatgccttcccaaaacat 325
Query: 126 cctacttacaacattcaatgttagttaatgggtgtttgtacacagtccttcaacctctaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 326 cctacttacaacattcaatgttagttaatgggtgtttgtacacagtccttcaacctcaaa 385
Query: 186 gatcagcttttaaggaaagatttcctataataatacaaatctcagttctaaaactctggc 245
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 386 gatcagcttttaaggaaagatttc-tataataatacaaatctcagttctaaaactctggc 444
Query: 246 ctg 248
|||
Sbjct: 445 ctg 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space: 152482
Effective search space used: 152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
