BAC Information

Click to search

BAC

Clone NameMSMg01-457E08
Chromosome4 (Build37)
Map Location 7,123,052 - 7,123,442
singlet/doubletsinglet
Overlap genenone
Upstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457E08.T7 (MSMg01no457_e08.b1)MSMg01-457E08.TJ (MSMg01no457_e08.g1)
ACCAG543377AG543378
length783804
length of high quality
(start - end)
440 (48 - 487)391 (81 - 471)
definitionCHROMAT_FILE: MSMg01no457_e08.b1 PHD_FILE: MSMg01no457_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:25 2005CHROMAT_FILE: MSMg01no457_e08.g1 PHD_FILE: MSMg01no457_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTTTTTCCTAGCTGAATAGTACTCCATTGTGTAAATGTAC
CACATTTTCAGTATCCATTCCTCTGTTGAGGGATATTTGGGTTCTTTCCA
GATTCTGGCTATTATAAATAAGGCTGATAGGAACATAGTGGAGCATGTAT
CCTTATTACATGTGGGAGCATCTTCTGGGTATATGCCCAGGAGTTGTATA
GCTGGGCCTCAGGTAGTACCATACCTATTTTCTGAGGAACCACCAAACTG
ATTCCCAGAGTGGTTGTACCATTTTGCATTCCTACCAGCAGTGGAGGAGT
GTTCCTCTTTCTTCACATCCTTCCCAGCATCTGCAGTCACCTGGGTTTTT
GATTTTAGCCATTCTTACTGATGTGAGGTGCAATCTCAGGGTTGTTTTGA
TTTGCATTTCCCTGATGACTAAAGATGTTGAATATTTCTTTAGGGGCTTC
TCAGCCCTTCTATATTTCTCTGGTGAAAATTCTTTGGTTAACTCTGTACC
CTCATTTTTAAAAGGTTATTTTGGCTCTTGGGNCCTAAGCCCTGTGCATT
GTTTTGCGTTAGTGTTGAGAATTTGCTTTCTCTTGGATGGGGGGCTGGCC
GGAGGACTCTGTTTGTGTGTGTGGGGGACGGCTGGAGCCTGTGCCTCGTG
TCGTTGGTGCTCTTTTCTCGCTGTGTTTTGGCGGTCGTTCTGGCGCTGTT
TTCTGTTCCCTCTCTCGTTTTATCCCCTGTTCN
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCGTAGTGGAAGGTAGA
CAGAAATGAAGTGTTAGAGCATAGTCACATAGCACAGCCCACCTCCCAGA
TTTAGTGATCTATACCTTTCATTCCAGCACTCAGAAGGCCAAGGGAAGAG
GTAAGCAGATTTAGACTTCCAGGCAAGCATGGACAACATTGTGAGCCCTT
GCTAAAAGAACACAAAAACAACAAAAACAAACAATTCCCATCCAGAGAAG
CAGTGAAACAAGAGAACCACATTGTATATCTTAAGGCATTGGTTCTTATG
AAGTTATTTAATGCATTAGAGAGAATATAAACTGTTACAAAAACACAAAT
ATTGTTAAAGGTAAGAATACAGTAATAGACCCAAATAAGTTGAGATGAGC
CAGAAGGGGGTGGGGGAGATCTGATTGTTTTGTGATTTCCCTCTTTTTTT
ACACCCTTTTTGAACTCTCATTCTTTTCATTTGGCTTTCAATTGACAATG
TTCTTTTTCCTCCCTTCCTCTTTTTCTCTACTTGATTACTCTTGCTTTAC
CTTTTCTCTTTTTTCGACTTTTCACTCCCTTTTTTTCTCTTCTCTTTTCC
TTCTTTTTTGCCCTGATTTTTTCTCTTCCCCCTTTTTTTTCTTTTTTTTT
TCCCTTTCCATTTTTCCCTTTACTCCTTTTTCTCTTTATTTGTTCCTCCT
CCTTTTTTTTTTCCTTTTTTCCCTATATTTCCTTTTTATTTATCCTTCTA
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_e08.g1 MSMg01no457_e08.g1 CHROMAT_FILE:
MSMg01no457_e08.g1 PHD_FILE: MSMg01no457_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:25 2005
         (391 letters)



>mm_chr4_7122665_7123455
          Length = 791

 Score =  725 bits (375), Expect = 0.0
 Identities = 387/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccgtagtggaaggtagacagaaatgaagtgttagagcatagtcacatagcacagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 attccgtagtggaaggtagacagaaatgaagtgttagagcatagtcacatagcacagccc 719

                                                                       
Query: 61  acctcccagatttagtgatctatacctttcattccagcactcagaaggccaagggaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acctcccagatttagtgatctatacctttcattccagcactcagaaggccaagggaagag 659

                                                                       
Query: 121 gtaagcagatttagacttccaggcaagcatggacaacattgtgagcccttgctaaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtaagcagatttagacttccaggcaagcatggacaacattgtgagcccttgctaaaagaa 599

                                                                       
Query: 181 cacaaaaacaacaaaaacaaacaattcccatccagagaagcagtgaaacaagagaaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cacaaaaacaacaaaaacaaacaattcccatccagagaagcagtgaaacaagagaaccac 539

                                                                       
Query: 241 attgtatatcttaaggcattggttcttatgaagttatttaatgcattagagagaatataa 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 attgtatatcagaaggcattggttcttatgaagttatttaatgcattagagagaatataa 479

                                                                       
Query: 301 actgttacaaaaacacaaatattgttaaaggtaagaatacagtaatagacccaaataagt 360
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 478 actgttacaaaaacacagatactgttaaaggtaagaatacagtaatagacccaaataagt 419

                                          
Query: 361 tgagatgagccagaagggggtgggggagatc 391
           |||||||||||||||||||||||||||||||
Sbjct: 418 tgagatgagccagaagggggtgggggagatc 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)