BAC Information

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BAC

Clone NameMSMg01-457F10
Chromosome4 (Build37)
Map Location 25,926,536 - 25,926,784
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F10.T7 (MSMg01no457_f10.b1)MSMg01-457F10.TJ (MSMg01no457_f10.g1)
ACCAG543429AG543430
length760776
length of high quality
(start - end)
461 (50 - 510)249 (79 - 327)
definitionCHROMAT_FILE: MSMg01no457_f10.b1 PHD_FILE: MSMg01no457_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:30 2005CHROMAT_FILE: MSMg01no457_f10.g1 PHD_FILE: MSMg01no457_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTATTATACGAATCTTAAACGGCGAGAAACTCTTAAAGGAA
ATATTCAACATCCTTACCTATTAGCTAGATGCAAATCAAAGCTACTTTGA
GATTCCATTTTACACTTAGTTGAATAAATAAGGTCAATAATGCAAGTGAA
GGGTCATGAGGAACATGGGGAATACTCCACCATTGCTGGTGGAAGTGGAA
CCTCATACAGCCATTATGGAAATCAATATGGTAGCTTCTCAGAAAATTTG
AAATCAATCTCCCTCACGATCCTGCTATACCACCTTTTGGAACATTCCCA
AAAGATGCTTTGCCCTACCACAAAGACACTTGCTCAACCATGTTCATAGG
AGCTTTACTCATTATAGCTAGGAACTGAAAACAACCTAGGTGTCTTTCAA
CTAAAGAATGGATAAAGAAAATCTGCTATATACACAATGGACTATTACTC
AGCTGTTAAGAANAATGACATCATAAAATTTGCAGGCAAATCTATGGAAC
TAGAAAAAAATCATCTGGTAGATTGAAACTTAGACCTTGTAAGACAATAA
TGGTAGTTTTCCCATATGTAGGTAAGTTAATGGCTCCTAAAGGAAATCTT
GGCCTCCACCCATGGGACCCCCTCTGGGTATTTAATACAGGAAGGGCCTT
CTCCAAAAAATGGGATTTTTTTTGGGGATGTGGTGAAAAAAAATCCCCTT
TCTTTAAAGG
NNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTACAGCGAAATTCTCAGAGAAGCTGAAGCA
TGGTTTTACTTTCAAGAACATGGGTTCCTGAATATAATGATATATTCAAC
TCATACTAATTGTAGGCATAATATTGCTTCAAAGGAGGAATGTCCAAAGA
AATACATTGGGGTCTGATGTAGGCATCCATAAACACCAACCTCAAACCAA
CATGCCCAGTTCTTCGCATCCTGCCATTTTTGCTGATTACTTTTATGGTT
TTTAATCTGTCCTCTTCCTAAATAGGACTAATAGTAAGTGTAATAAAAGA
AGGTTCTGCTCTCAGATCTGCCTATCATTACAAAGAATTGTACATTTTCT
CTCTTATATATGACATCAGAATAGTATGTAACTTCTTCATAAAATGGGAG
ATCTTTAAAAAATCCATTCAGTTATTTAGAANAAAAAAGCTTGTTGTACA
AATGTAATATAAAATTATTGTATTATGTAATTGNGTTATTAACCCGAACT
AAATTCACAATGAAAACCTTGTCAACCTTCCCAAAGTCATAGTTGGTTTC
TTTTTAAAGATAAAAAACATTGTGTTTTTTTTCCTAAAGGTATTTAAAGG
CCTTATTAACCACCAACAAAAAACCCTCTTTTTTTTTAATTTTGGTATCA
AATCCCTTCTTCCTTTCATACCCCCCTTTTTGCCACCTTTTTCTTTACAT
ATATACCCCCTCTTACTAAATAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f10.g1 MSMg01no457_f10.g1 CHROMAT_FILE:
MSMg01no457_f10.g1 PHD_FILE: MSMg01no457_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:30 2005
         (249 letters)



>mm_chr4_25926336_25926984
          Length = 649

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%), Gaps = 2/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctcagagaagctgaagcatggttttactttcaagaacatgggttcctgaatataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aattctcagagaagctgaagcatggttttactttcaagaacatgggttcctgaatataat 390

                                                                       
Query: 61  gatatattcaactcatactaattgtaggcataatattgcttcaaaggaggaatgtccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gatatattcaactcatactaattgtaggcataatattgcttcaaaggaggaatgtccaaa 330

                                                                       
Query: 121 gaaat-acattggggtctgatgtaggcatccataaacaccaacctcaaaccaacatgccc 179
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 g-aatcacattggggtctgatgtaggcatccataaacaccaacctcaaaccaacatgccc 271

                                                                       
Query: 180 agttcttcgcatcctgccatttttgctgattacttttatggtttttaatctgtcctcttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agttcttcgcatcctgccatttttgctgattacttttatggtttttaatctgtcctcttc 211

                     
Query: 240 ctaaatagga 249
           ||||||||||
Sbjct: 210 ctaaatagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)