Query= MSMg01no457_g09.b1 MSMg01no457_g09.b1 CHROMAT_FILE:
MSMg01no457_g09.b1 PHD_FILE: MSMg01no457_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:35 2005
(454 letters)
>mm_chr4_29269901_29270753
Length = 853
Score = 824 bits (426), Expect = 0.0
Identities = 447/458 (97%), Gaps = 9/458 (1%)
Strand = Plus / Minus
Query: 1 caaatgctttcctctttgtgctgctttcacctcattaagtaatattgatttatcattcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 caaatgctttcctctttgtgctgctttcacctcattaagtaatattgatttatcattcta 594
Query: 61 gtaccctaacacttaaccaaatacactgtatgaaacactcttctcaacgataattaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gtaccctaacacttaaccaaatacactgtatgaaacactcttctcaacgataattaaaaa 534
Query: 121 aatgaattgtcattctgtctaaagttcttaaaacctcctggtataatggtcctgacaata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 533 aatgaattgtcattctgtctaaagttcttaaaacctcctggtataatggtcctgacaaga 474
Query: 181 cacctctataaaacacatctgtcactcctgcttcttttacttttattggcaaatgaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cacctctataaaacacatctgtcactcctgcttcttttacttttattggcaaatgaatat 414
Query: 241 ttt----cttttagcactttaagagcaataattttctactttccttgattcaaagccgaa 296
||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tttcccac----agcactttaagagcaataattttctactttccttgattcaaagccgac 358
Query: 297 gaaaatccacttaaagcacatgaactgcaatagattaaagatgaatgagctctgtgttat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaaaatccacttaaagcacatgaactgcaatagattaaagatgaatgagctctgtgttat 298
Query: 357 cttcaagacccttgtgttcaagaactctcaatcacactgccaccaacacttggccacaag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cttcaagacccttgtgttcaagaactctcaatcacactgccaccaacacttggccacaag 238
Query: 417 tttgtaaatcaatttgtgatacatacatttattgaagg 454
||||||||||||||||||||||||||||||| ||||||
Sbjct: 237 tttgtaaatcaatttgtgatacatacattta-tgaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 853
Length adjustment: 10
Effective length of query: 444
Effective length of database: 843
Effective search space: 374292
Effective search space used: 374292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_g09.g1 MSMg01no457_g09.g1 CHROMAT_FILE:
MSMg01no457_g09.g1 PHD_FILE: MSMg01no457_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:35 2005
(459 letters)
>mm_chr4_29103008_29103866
Length = 859
Score = 857 bits (443), Expect = 0.0
Identities = 455/463 (98%), Gaps = 8/463 (1%)
Strand = Plus / Plus
Query: 1 actggaaagcagaagccaggcattctttgcagatttaagtccttaattaggcataaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggaaagcagaagccaggcattctttgcagatttaagtccttaattaggcataaacta 260
Query: 61 atcatgctgttagctgcagagaagagatgacacataattgttagtgctaatttcttaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatgctgttagctgcagagaagagatgacacataattgttagtgctaatttcttaatt 320
Query: 121 gttcgaaagccatccttcagtgtgagcttcatccagctagagtgatctgcagggtggcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcgaaagccatccttcagtgtgagcttcatccagctagagtgatctgcagggtggcat 380
Query: 181 cgccctctaagcatcaaagaacgagtacttaacaatacacttaattctatttactgtgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgccctctaagcatcaaagaacgagtacttaacaatacacttaattctatttactgtgtc 440
Query: 241 tcacaa----tttttttgatttcccaggatataattcccttttactaaaggaagattgat 296
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacaacaaattt----gatttcccaggatataattcccttttactaaaggaagattgat 496
Query: 297 gtggcgcctcagtcataagaatgtgaaattaagtcaacatgtgtaaatctatttttcata 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtggcgcctcagtcataagaatgtgaaattaagtcaacatgtgtaaatctatttttcata 556
Query: 357 ttaaatcatcagcttgcaattatcctctcataagtgcagaaggcagaagaacacaaaaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttaaatcatcagcttgcaattatcctctcataagtgcagaaggcagaagaacacaaaaaa 616
Query: 417 tgtctattaaaaacgtcaactttctaaactgcccttgaactta 459
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtctattaaaaacgtcaactttctaaactgcccttgaactta 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
