Query= MSMg01no457_h01.b1 MSMg01no457_h01.b1 CHROMAT_FILE:
MSMg01no457_h01.b1 PHD_FILE: MSMg01no457_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:38 2005
(544 letters)
>mm_chr4_66856585_66857528
Length = 944
Score = 996 bits (515), Expect = 0.0
Identities = 533/540 (98%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 5 gaattcattcttttaccccaagataaaagatccaaggctaaaggtattttgacagctgta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcttttaccccaagataaaagatccaaggctaaaggtattttgacagctgta 264
Query: 65 tagacagaagaatatgtactgatctcaaggagctcccagagactaaagaatccacatgac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagacagaagaatatgtactgatctcaaggagctcccagagactaaagaatccacatgac 324
Query: 125 ccaataaccccatctatgaaccagtatgattcagtaaaatactatattaactggtctctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaataaccccatctatgaaccagtatgattcagtaaaatactatattaactggtctctg 384
Query: 185 ctatgtgttcctcaaggtccttgggaaaaagaatcagaagatggaaatcaaattgaataa 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 ctatgtgttcctcaaggtccttggggaaaagaatcagaagatggaaatcaaattgaataa 444
Query: 245 catttaagaacataggtgaatgaatgaatgaattcattaacgaatgcctagatatgtaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catttaagaacataggtgaatgaatgaatgaattcattaacgaatgcctagatatgtaga 504
Query: 305 tggatggatcaatggatagataggcaaataaataagaaacggaacatctgtcttcacatt 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggatggatcgatggatagataggcaaataaataagaaacggaacatctgtcttcacatt 564
Query: 365 atttagtaattagggtgttgatcatgtacaacaaattgttaagctgccagaatctgaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttagtaattagggtgttgatcatgtacaacaaattgttaagctgccagaatctgaaaa 624
Query: 425 cttatggaattgtatagaaccacagatagacaaacagactgacagacagacagacagaca 484
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||
Sbjct: 625 cttatggaattgtatagaaccacagatagacagacagacagacagacagacagaca--ca 682
Query: 485 cacacacacacacacacacctaanagtgccactaacaaaaccctatgttttaaaaatgtt 544
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 683 cacacacacacacacacacctaaaagtgccactaacaaaaccctatgttttaaaaatgtt 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_h01.g1 MSMg01no457_h01.g1 CHROMAT_FILE:
MSMg01no457_h01.g1 PHD_FILE: MSMg01no457_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:38 2005
(443 letters)
>mm_chr4_66883347_66884190
Length = 844
Score = 797 bits (412), Expect = 0.0
Identities = 436/444 (98%), Gaps = 1/444 (0%)
Strand = Plus / Minus
Query: 1 catgctctagaatctggtcaaaatatctgactcaccactaaa-aattttctaagtgtgcc 59
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct: 644 catgctctagaatctggtcaaaatatctgagttaccactaaacaattttctaagtgtgcc 585
Query: 60 tcatactaaattagaattaacgacctgtatgttaaagattgttaaatgtcccacaaactc 119
||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 584 tcataataaattagaattaatgacctgtatgttgaagattgttaaatgtcccacaaactc 525
Query: 120 ggagagtattattccatctgtgtgcaatgattttccatgctctggctttctggttgggtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggagagtattattccatctgtgtgcaatgattttccatgctctggctttctggttgggtt 465
Query: 180 gtattctcactctgtgcctgtggctaggaggttctaccttcagggagcattgtctctgca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtattctcactctgtgcctgtggctaggaggttctaccttcagggagcattgtctctgca 405
Query: 240 gttggatgagatcctccttttgctgatcccagagtttcatgcttcatgttacaaagccag 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 404 gttggatgagatcctccttttgctgatcccatagtttcatgcttcatgttacaaagccag 345
Query: 300 attcttttatattgtaactatatctagacgaatattcttctttcccccccaggggattta 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 344 attcttttatattgtaactatatctagacgaatattcttctttctcccccaggggattta 285
Query: 360 atagaaacaaaagtcagaaaatgtcctctaaatcacaacctccagcacatagcacatttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atagaaacaaaagtcagaaaatgtcctctaaatcacaacctccagcacatagcacatttg 225
Query: 420 ttttaatatttaataaatgttgtg 443
||||||||||||||||||||||||
Sbjct: 224 ttttaatatttaataaatgttgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 844
Length adjustment: 10
Effective length of query: 433
Effective length of database: 834
Effective search space: 361122
Effective search space used: 361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
