BAC Information

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BAC

Clone NameMSMg01-457O06
Chromosome4 (Build37)
Map Location 103,423,749 - 103,424,150
singlet/doubletsinglet
Overlap genenone
Upstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
Downstream geneEG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457O06.T7 (MSMg01no457_o06.b1)MSMg01-457O06.TJ (MSMg01no457_o06.g1)
ACCAG543850AG543851
length763789
length of high quality
(start - end)
398 (71 - 468)402 (76 - 477)
definitionCHROMAT_FILE: MSMg01no457_o06.b1 PHD_FILE: MSMg01no457_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:17 2005CHROMAT_FILE: MSMg01no457_o06.g1 PHD_FILE: MSMg01no457_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAATGTTTCCTGACTTTGAAATTTCAAAGCCTGCTCCTAGTGA
CACACTTTCTCCAACAAAGACCCTCTCCCTAAACCTATGCAAACATCACC
ACCAACTAGGGAGCAGGTGTTCAAACATCTAAGCCTATAGGAGACATTCT
CATTCAAACTACCACACACCATAAGTCCTTCAAGACCGATATGTGTTGTC
CAAACATTGCAAAATGTAGAGTCTTCCACTGGAGACTAATCGACCTACCA
GAGTCTATACTTTTAGAGAAATACTTCTCTTTCTCCTAGCACCCAACAGT
TGCCAATAGCTGCACAGCTAGGGGTGAGATCATGTGCCAAGCTCCTCCTC
TCCATGCTGGGATTTGGTTTGACATGGGATTTCATGTGCTTTTGTCCATG
TTGTCCCAGCCTCTGTGAGTTCCTATATACAGCAGTTCTGGTGTGTCCCA
GCGCCCCTGTTCCACATTACCCATCGCCCACTGGGTTTTTGGCCTTTTTC
TGCCTTTCCTTCTGGCAGGAACCCTGAGGCCTTGGGAAAGACCGGTTCCT
TTTTAGGCGGAAATTCTGGAGTCTCTATTTCCTTATTTTCTTCACACATT
TGGTTTTACGCCTCCCTTCTTGTAACACTTAGTTTCTTCTGTTGTCTTAA
TTTAGTTATATTTTTTTTTTCCGCTCATCCCCACTCTTCTTTTTATTTGT
GTTTTCACTCTTG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTTGCTGTTTTCCATTCTTTTAG
TCGATTTGTTTCTGTGATGGAGTCTGACAGACATAGGCACTAAGCCAATT
CTGCAAGATCTCTGTGTGAAATGTCTCTTTGCTCCATCCTTTGTTTTGTT
TTTAGGAAGCAGAGCATGATAATGACAAGCAAAAGGATGGCAGTTGAGAG
AACAGGAATCAAACTCCAGTTAAACATGGACCATCCGAAAGCTGTTGTGA
AAAACCACACAAACTCTTAAGTCTTGTCTTCTTCATCTAAGGTTAAAATG
GGATCCTTTCTTCTAAGCCATCATTTTAGGGCCAAGTAAAGTATTGGAGA
GAAAGCAGTGTCGAGGCTCTGACTAAGTATTGAGAAACAGTCCTTATACA
GCCCTAAATTACAACACTGTGTCCTAGACCAGTGAGTGGTTTTGATGTCT
TTGATATCTGCTGTGTTAGTGCTTAACCCACTTTATTATGCCTCTTATTA
TCCTGTGACTGCCTTATATGCCATTCCATATTTTTTTTGGCTTTTGTTGT
TACCTGGTTTTTCTGCATCTTTCCCTTTCTTTATTTATTATTGTCGCTTT
TTTTTTTATCTTTTACTTTATTCCCCATTTTTTATCACCATTCCCTCTTA
TCTGTTTACCCTTTTTCCCCCTTCTATTCCCCACATATATTTTTTTTTCT
TTTTTTAACCTCTTCTAACTTTCTTCTACAAATTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_o06.g1 MSMg01no457_o06.g1 CHROMAT_FILE:
MSMg01no457_o06.g1 PHD_FILE: MSMg01no457_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:17 2005
         (402 letters)



>mm_chr4_103423549_103424350
          Length = 802

 Score =  723 bits (374), Expect = 0.0
 Identities = 395/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttgctgttttccattcttttagtcgatttgtttctgtgatggagtctgacagacata 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aatttgctgttttccatccttttagtcgatttgtttctgtgatggagtctgacagacata 543

                                                                       
Query: 61  ggcactaagccaattctgcaagatctctgtgtgaaatgtctctttgctccatcctttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggcactaagccaattctgcaagatctctgtgtgaaatgtctctttgctccatcctttgtt 483

                                                                       
Query: 121 ttgtttttaggaagcagagcatgataatgacaagcaaaaggatggcagttgagagaacag 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 482 ttgtttttaggaagcagagcatgataatgagaagcaaaaggatggcagttgggagaacag 423

                                                                       
Query: 181 gaatcaaactccagttaaacatggaccatccgaaagctgttgtgaaaaaccacacaaact 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 422 gaatcaaactccagttaaacatggaccatccaaaagctgttgtgaaaaaccacacaaact 363

                                                                       
Query: 241 cttaagtcttgtcttcttcatctaaggttaaaatgggatcctttcttctaagccatcatt 300
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 362 cttaagtcttggcttcttcatctaaggttaaaatgggatccattcttctaagccatcatt 303

                                                                       
Query: 301 ttagggccaagtaaagtattggagagaaagcagtgtcgaggctctgactaagtattgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 302 ttagggccaagtaaagtattggagagaaagcagtgtcgaggctctaactaagtattgaga 243

                                                     
Query: 361 aacagtccttatacagccctaaattacaacactgtgtcctag 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aacagtccttatacagccctaaattacaacactgtgtcctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)