Query= MSMg01no457_o11.b1 MSMg01no457_o11.b1 CHROMAT_FILE:
MSMg01no457_o11.b1 PHD_FILE: MSMg01no457_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:18 2005
(440 letters)
>mm_chr4_89969183_89970022
Length = 840
Score = 793 bits (410), Expect = 0.0
Identities = 433/444 (97%), Gaps = 8/444 (1%)
Strand = Plus / Minus
Query: 1 ggggctcattagagatcccccataacccaccacaccaggaaccctctgacctgtggaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggggctcattagagatcccccataacccaccacaccaggaaccctctgacctgtggaatc 581
Query: 61 agactgattagtaagtatgctctgagtggtgtttgagtgttttgcta-ttttttttctct 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 580 agactgattagtaagtatgctctgagtggtgtttgagtgttttgctatttttttttctct 521
Query: 120 agtaaatctgtaagcctgtgacatagtactgccaaatggggctaagtggagacttccctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agtaaatctgtaagcctgtgacatagtactgccaaatggggctaagtggagacttccctg 461
Query: 180 atccattagtaggggactgcatccctctagtttctctggagaaatgttatgggccacatc 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acccattagtaggggactgcatccctctagtttctctggagaaatgttatgggccacatc 401
Query: 240 tgcttgtg---ttttattctgcagtagtctctctttacttttggtattgtatgctgattg 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgcttgtgggc----attctgcagtagtctctctttacttttggtattgtatgctgattg 345
Query: 297 ccattaatatgtctgtgtttcactggctgttatttgtgttgtgcctgacttattttcttc 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccattaatacgtctgtgtttcactggctgttatttgtgttgtgcctgacttattttcttc 285
Query: 357 tatttgaacttagaacaatgggacagactcagacaaaccccctggctgttttctcacagt 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgtttgaacttagaacaatgggacagactcagacaaaccccctggctgttttctcacagt 225
Query: 417 aggggtagatacttttaatgtgtc 440
||||||||||||||||||||||||
Sbjct: 224 aggggtagatacttttaatgtgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_o11.g1 MSMg01no457_o11.g1 CHROMAT_FILE:
MSMg01no457_o11.g1 PHD_FILE: MSMg01no457_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:18 2005
(186 letters)
>mm_chr4_89888061_89888646
Length = 586
Score = 352 bits (182), Expect = e-102
Identities = 185/186 (99%)
Strand = Plus / Plus
Query: 1 agaaaggaccctgcagctatgctgtatgataattatgagaacagattgaagtagtaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaggaccctgcagctatgctgtatgataattatgagaacagattgaagtagtaaaag 260
Query: 61 tcttttgtaaatgtgagttgtcctgtaacatcctcgaaatcttcatggtgggagttggtt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tcttttgtaaatgtgagttgtcctgtaacatcctcgaaatcttcatgttgggagttggtt 320
Query: 121 cctaactctccaggaagaggagacaggttagatgttgagttgaacacctgataagtgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaactctccaggaagaggagacaggttagatgttgagttgaacacctgataagtgttt 380
Query: 181 taataa 186
||||||
Sbjct: 381 taataa 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space: 102884
Effective search space used: 102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
