BAC Information

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BAC

Clone NameMSMg01-458H10
Chromosome4 (Build37)
Map Location 15,732,283 - 15,732,611
singlet/doubletsinglet
Overlap genenone
Upstream geneOtud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095
Downstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458H10.T7 (MSMg01no458_h10.b1)MSMg01-458H10.TJ (MSMg01no458_h10.g1)
ACCAG544288AG544289
length749750
length of high quality
(start - end)
547 (75 - 621)329 (328 - 656)
definitionCHROMAT_FILE: MSMg01no458_h10.b1 PHD_FILE: MSMg01no458_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:04 2005CHROMAT_FILE: MSMg01no458_h10.g1 PHD_FILE: MSMg01no458_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCTCTTACTATCCGCCAACAAGAGCAAAGGCATCACCTGGAG
AGAGGATACTCTGATGGAGTATTTGGAGAATCCCAAAAATATATATCGTG
GAACAAAAATGATCTTCAATGGAATGAGAATAAGGGAGAAAAGGCAGACC
TGATAGCTTATCTTAAAAGGGCTACTAATGAGTAATTCTTCTGCCTTATT
TATTACAAAACAAACGTCTCATGGCTTTTAATGTATACCATAATTTAATT
CATACACCAAATTCAGATCACGAATGTTTTATCAACGTTTTTGTTGCACA
GTCCTGATTTAAATAAAACAGTTGTCATAAAAGAAAAAAGTGAAACGTGA
AAGTTATTCATTAACATCTTTGCTTAAGTTGTATCAGAGCTTCACCTAAT
GAAGTCAGAAACACATTTCTGGTGTTCATCCCATATACAAATGGCTTATT
TAAAAAAATATCAAATTTCTTTTCTAGTATTGAAAAGTCTGTGATCTAGA
ATTCAAAAATTATTTTCATCAAAATCAAGGGAATATTGCACTCCATATTG
CAGGTGCCTATAAAGATCCTAACCTTGTAGAAAATTGTCAAGTAATCATC
TTGCAGATAAATGTGGAATTTTTAATACAAAAATTACTGAATAGGTAGTA
GATAGGAGTGTAACATTTGTCTATCTGTATTAAGGTACCTCATAAATAN
NACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGCTAAATTCTCCACTCATGTTTGTTCTTATAAAGA
ATCATTTATCCAGAAAGTCTTATTACTTATTAAACTGGAATCCTCCTCAT
TGCATCCACCTGAGGTACACAGGGTTTGTTACTCTTTTCATTGTATACAT
GAGAAAGATTTAATCACGAGGCAGTGATTACTTTCATAACCATGAAATAG
TTTTCTAGCCAAGAGTTTGAAAATTCTCCTGATACAAATATTGCAAATGA
ATAAATTCTGACTTTAATGGTTCNGTTATAGTTAACCAATATGCAGAAAC
CAGTCAGTGCATATGCATAGCAACTGCAGTAATCTACTTGCCTGTGATTT
CCCTTCTCCACTTTTGGCTGTTAACCAGAACACAGAGTCTTTTGTTGTTT
GCTGAGTAATTAAAAAAAGAGGACCATAAGTGATGTTTCTTCCTCCCCTT
TCCTAATATATGGAATTCATGACCTGCCACTTCTAGGATGCAGAAGCCAA
AGGAAAACAAGCTTTCTTGGTTCTTCCAAAATCTTAAGTATTTGTCAAAC
ATGCTGTACTTCCTCGGTGGTAAATGATCCCATTTTCAGGAGTTTATCTT
CTGTGTTTACTCATATTTCCAATANATGATAGCACACTTGGGTGCAACGT
TCTTATAAAGCTTCCAAGTGNTAAAGTGAGCCAGAGGCAGATCCCTGTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_h10.g1 MSMg01no458_h10.g1 CHROMAT_FILE:
MSMg01no458_h10.g1 PHD_FILE: MSMg01no458_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:04 2005
         (329 letters)



>mm_chr4_15732083_15732811
          Length = 729

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagttaaccaatatgcagaaaccagtcagtgcatatgcatagcaactgcagtaatctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atagttaaccaatatgcagaaaccagtcagtgcatatgcatagcaactgcagtaatctac 470

                                                                       
Query: 61  ttgcctgtgatttcccttctccacttttggctgttaaccagaacacagagtcttttgttg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 469 ttgcctgtgatttcccttctccacttttggttgttaaccagaacacagagtcttttgttg 410

                                                                       
Query: 121 tttgctgagtaattaaaaaaagaggaccataagtgatgtttcttcctcccctttcctaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttgctgagtaattaaaaaaagaggaccataagtgatgtttcttcctcccctttcctaat 350

                                                                       
Query: 181 atatggaattcatgacctgccacttctaggatgcagaagccaaaggaaaacaagctttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atatggaattcatgacctgccacttctaggatgcagaagccaaaggaaaacaagctttct 290

                                                                       
Query: 241 tggttcttccaaaatcttaagtatttgtcaaacatgctgtacttcctcggtggtaaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tggttcttccaaaatcttaagtatttgtcaaacatgctgtacttcctcggtggtaaatga 230

                                        
Query: 301 tcccattttcaggagtttatcttctgtgt 329
           |||||||||||||||||||||||||||||
Sbjct: 229 tcccattttcaggagtttatcttctgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)