Query= MSMg01no458_h21.b1 MSMg01no458_h21.b1 CHROMAT_FILE:
MSMg01no458_h21.b1 PHD_FILE: MSMg01no458_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:06 2005
(566 letters)
>mm_chr4_119973475_119974437
Length = 963
Score = 949 bits (491), Expect = 0.0
Identities = 541/565 (95%), Gaps = 14/565 (2%)
Strand = Plus / Minus
Query: 2 ggaattcattgccattttgcctcaaaatttccatgccaagatccaggtcagaaatttcta 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaattcattgccaccatgcctcaaaatttccatgccaagatccaggtcagaaatttcta 714
Query: 62 tcgcccagcctccagattagggtcactggtgagcctgccaatactggattatagttcatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tcgcccagcctccagattagggtcactggtgagcctgccaatactggattatagttcatt 654
Query: 122 ccagatatagttaagatatagttaagttgataaccaggaataaccactacaggagttggt 181
|| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 653 cc-----------agatatagttaagttgataaccaggaataaccactagaggagttggt 605
Query: 182 agcgccaccttggtgtgcccatcactaaggccagtgatcttttaaaacaagagagaaatg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agcgccaccttggtgtgcccatcactaaggccagtgatcttttaaaacaagagagaaa-c 546
Query: 242 ccatagggtaagaatctagagagtgttttatgagaatagttgaattgactgggccctctg 301
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ccattgggtaagaatct--agagtgttttatgagaatagttgaattgactgggccctctg 488
Query: 302 gaagattcgggaccactgttgggcacacatttccacgatacagtgagtaaaaagtactaa 361
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 487 gaagattcgggaccactgttgggcacacatttccacgatacagtgagtagaaagtactaa 428
Query: 362 cgtttcctcaggatcctttctgtcctgggtgtcttgtcgaatgaggtcatcaggtctcat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cgtttcctcaggatcctttctgtcctgggtgtcttgtcgaatgaggtcatcaggtctcat 368
Query: 422 acaaccctgaccaaagtctcaatggtatccccttttcacagatgatgaaactgaggctca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acaaccctgaccaaagtctcaatggtatccccttttcacagatgatgaaactgaggctca 308
Query: 482 cagatagttgctgactaccagagtcttaggaaggtctcccactgtcctcctccccatagc 541
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 307 cagatagttgcggactaccagagtcttaggaaggtctcccactgccctcgtccccatagc 248
Query: 542 cttttgagggcatgcaagggtccct 566
|||||||||||||||||||||||||
Sbjct: 247 cttttgagggcatgcaagggtccct 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 963
Length adjustment: 10
Effective length of query: 556
Effective length of database: 953
Effective search space: 529868
Effective search space used: 529868
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_h21.g1 MSMg01no458_h21.g1 CHROMAT_FILE:
MSMg01no458_h21.g1 PHD_FILE: MSMg01no458_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:06 2005
(245 letters)
>mm_chr4_119766420_119767064
Length = 645
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%)
Strand = Plus / Plus
Query: 1 ggcagaagagagccgccccagcatccattgtggcatctctccggcccggactagggatga 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcagaagagggccgccccagcatccattgtggcatctctccggcccggactagggatga 260
Query: 61 caggcccatggacatggatgtctccgaccttcagctgttcatatagcacacaggggactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggcccatggacatggatgtctccgaccttcagctgttcatatagcacacaggggactc 320
Query: 121 gtgggggccgcttgtcacccaaacccactcaatggcaatactgacatcttccaggctgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggggccgcttgtcacccaaacccactcaatggcaatactgacatcttccaggctgtt 380
Query: 181 ttcaagacaggcattcaggcagaaaaatgccagtatgctttctgtctgcagagtagtggg 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaagacaggcgttcaggcagaaaaatgccagtatgctttctgtctgcagagtagtggg 440
Query: 241 ctatg 245
|||||
Sbjct: 441 ctatg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
