BAC Information

Click to search

BAC

Clone NameMSMg01-458I08
Chromosome4 (Build37)
Map Location 103,964,229 - 104,193,227
singlet/doubletdoublet
Overlap geneDab1
Upstream gene4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
Downstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458I08.T7 (MSMg01no458_i08.b1)MSMg01-458I08.TJ (MSMg01no458_i08.g1)
ACCAG544331AG544332
length760741
length of high quality
(start - end)
247 (77 - 323)258 (372 - 629)
definitionCHROMAT_FILE: MSMg01no458_i08.b1 PHD_FILE: MSMg01no458_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:09 2005CHROMAT_FILE: MSMg01no458_i08.g1 PHD_FILE: MSMg01no458_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,964,229 - 103,964,474)(104,192,971 - 104,193,227)
sequence
NNNAACTCATAATTGCGGCGCTAAACGACTCACACATCAAGAACAGGGCG
GAATTCCAAGAGAATGCAATAAAAAGACATTCATGATCACTCTAGAATAT
GAGTCTTTAGAAACAGAGTTTGCCCGAAAAGTCACAGAGACAGAAACAGA
AGAGCATGTATATATGATGGTAGCCACTTTCATATGCAAGTGTAATCAAA
GGTAATTATTGTTATAGGATAAGGAATATGGGATTCAGAGGCAAGCCGAA
CACTGATATCTGCTTCCTCTCCTTTGATGAATTAGCTTGTTCTATCCTAA
GTTTATGTTTCTTTGCAGAGTCTTATAATAGTAGCACCTAGCTCTTGAAA
TTATAAGGACAATAGCACGCATTTGTCACAGATATACGTGTCACCTATTA
TTATATTCAAACAGGTTTTCTTTTGTATTTTTTCATTTATTTTTTATTAC
TCTTTCAAAAGTCTAGCATTTCCTCTTTGTACCCAGAAACTTAGACATGG
AGAGGGGAAAGGATTCACTTGAGATTAAAGCCCTCTCAGAACACAGACCC
CAAAGGCAGACCCTCTCCAGTAGAGTTGCAGTGCAGTACATGTACAGTAC
AGGAGAAACATGATAGTAGTCATTTGCTCACCAGCATTCCTTCCTCATTT
AGTAAAAACTAATTTAAAGTTTCATTTCATGATGAACATTTATAGCTGAC
CTGGAAAAACGAATGTCTCAGAATAACACGCTTATCTCCTGTGACTTAGA
ATTTTTCTAG
GTGCAATAAAGTGGGTAGAGCTGGAGGNCGCCTGGTTTCATACCTTGGGN
NGAACNAGAGAAGTTTCCCACACCAACGGGAGCAAAACAAAACACCAGAG
ATAAAAACAAATGCACCTGCTTTGAACAGCAGTACCGCAACCCAGAGTGG
CATCTGCCGCACTGCACCGAAACTCACGACCCAGGCAAGCGCTGTTAATC
ATGCTGCAAATGACGGACGCGGGGGATCCATCTAGCTCCGGCATTCCCCT
TCCCTTCTGTTAGTGCCTTCACATAAACCCAACTGGAAATCACCTAAAAT
CCAGTCTCCATTTCTTCTTTTCTGATCGTTGGTACAGGAAGGAGTTCATA
AAGTGACTTGGATGACAACTCTAATTTTCGTGAATGTTTTATTAAACAAG
GGGCCATTCATTTATTACTCCCAGACTTACTGAGAATTCCTTCCTCTTGT
ATCTCCATGGATTCTGAACCTCACATCGTCTATAGGTTGAGGCTATAGAG
TATTTCCCAAGGCCTGAAAGATGGAGTTCTTCCTTACGGTGTACAGCAGG
ATTATGCTTCCTACCATCTCTTGCTTCTAGCCTTGTGACTGGCTCCTGCC
CACTTCCTGTAACTGGGAACAAGCAGCATCACTTTGTGGATCTCAAGGAC
CAGCCATGGTTTGTTCTTTTGCACCTCCTGCCTCTTTCTCCTGGCTGGTG
TAAAGATCGCCCCCCTGCTATACCTTGCAAGAACTTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_i08.b1 MSMg01no458_i08.b1 CHROMAT_FILE:
MSMg01no458_i08.b1 PHD_FILE: MSMg01no458_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:09 2005
         (247 letters)



>mm_chr4_103964029_103964675
          Length = 647

 Score =  429 bits (222), Expect = e-125
 Identities = 240/246 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattcatgatcactctagaatatgagtctttagaaacagagtttgcccgaaaagtcaca 60
           ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 201 acattcacgatcactctagaatatgagtctttagaaacagcgtttgcccaaaaagtcaca 260

                                                                       
Query: 61  gagacagaaacagaagagcatgtatatatgatggtagccactttcatatgcaagtgtaat 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gagacagaaacagaagagcatgtatatataatggtagccactttcatatgcaagtgtaat 320

                                                                       
Query: 121 caaaggtaattattgttataggataaggaatatgggattcagaggcaagccgaacactga 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 caaaggtaattattgttataggataaggaatatgggattcacaggcaagccgaacactga 380

                                                                       
Query: 181 tatctgcttcctctcctttgatgaattagcttgttctatcctaagtttatgtttctttgc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctgcttcctctcctttgatgaattagcttgttctatcctaagtttatgtttctttgc 440

                 
Query: 241 agagtc 246
           ||||||
Sbjct: 441 agagtc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no458_i08.g1 MSMg01no458_i08.g1 CHROMAT_FILE:
MSMg01no458_i08.g1 PHD_FILE: MSMg01no458_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:09 2005
         (258 letters)



>mm_chr4_104192771_104193428
          Length = 658

 Score =  482 bits (249), Expect = e-140
 Identities = 255/257 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taattttcgtgaatgttttattaaacaaggggccattcatttattactcccagacttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taattttcgtgaatgttttattaaacaaggggccattcatttattactcccagacttact 398

                                                                       
Query: 61  gagaattccttcctcttgtatctccatggattctgaacctcacatcgtctataggttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gagaattccttcctcttgtatctccatggattctgaacctcacatcgtctataggttgag 338

                                                                       
Query: 121 gctatagagtatttcccaaggcctgaaagatggagttcttccttacggtgtacagcagga 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 337 gctatagagtatttcccaaggcctgaaagatggagttcttccttaaggtatacagcagga 278

                                                                       
Query: 181 ttatgcttcctaccatctcttgcttctagccttgtgactggctcctgcccacttcctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttatgcttcctaccatctcttgcttctagccttgtgactggctcctgcccacttcctgta 218

                            
Query: 241 actgggaacaagcagca 257
           |||||||||||||||||
Sbjct: 217 actgggaacaagcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)