BAC Information

Click to search

BAC

Clone NameMSMg01-458K08
Chromosome4 (Build37)
Map Location 68,510,060 - 68,510,293
singlet/doubletsinglet
Overlap geneDbc1
Upstream geneLOC433715, Tcp1-ps1
Downstream geneLOC622491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458K08.T7 (MSMg01no458_k08.b1)MSMg01-458K08.TJ (MSMg01no458_k08.g1)
ACCAG544426AG544427
length764745
length of high quality
(start - end)
531 (80 - 610)234 (331 - 564)
definitionCHROMAT_FILE: MSMg01no458_k08.b1 PHD_FILE: MSMg01no458_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:18 2005CHROMAT_FILE: MSMg01no458_k08.g1 PHD_FILE: MSMg01no458_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACATC
GGCGGAATTCTCACCTGATTACTACCAAATGGCTGAGAAATACCTGAAAA
AATGTTCAGCATCCTTAATCATCAGGGAAATGCACATCAAAACAACCCTG
AGATTCCATCTCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGA
CAGAAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCAATTGTT
GGTGGGATTGCTAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGATTC
CTCAGAAAATTGGACATAGTACTACTGTTTTATCTGGCAATACCTCTTCT
GGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAAGAAACATGCTCCA
CTATGTTCATAGCAGCCTTATTTTTAATGGTCAGAAGCTGGAAAGAATCC
AGATGCCCCTAGACAGAGGAATGGATACAAAAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGATTTTATGAAATTCCTA
GGCCAATGGTTGGACCTGGAGAGCATTATCCTGAGTGAGGTAACCCAATC
ACAAAAGAACTCATATGATATGTAGCCACTTGATAAGTGGATATTAGTCC
AGAAACTTACNAAAATCCAAGATATTTTTTACATTTTGCAAAACTCATGA
AACTTCCGGAAAAACTTAGAACTCTGTGGCGTCACCTGCCTCCTTCCTTA
ATAATGGGAAACAA
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAACTTCAAACCAACAGAATAGAGAGTACC
TACATTATAATGGGGTTGGTCCTCACGCAGTTGCTTTATTTAATGTTGCT
TTCATGTAGAACCAGTCTGCCTAGAGCCAGGCAGACTCTCCTGAGGGTGT
GTTTGGAGGACACCGCTCAAAATCTTCTGCCTTTGTCTCCCTAGAAAACC
ATGACATATACTTGTGACTTACAGTGAATTCCCAGTCTCTACGTTTTACA
GAAAACATTAAGCAACAGCTATCCGGTAGTTGCATTGACTGCCTTCCTCT
TGGCTGTGATTTGCTTTTGTCTTTTGAATAGAAGCATCCTCAAAGATGTT
GGAATTTCACCTCCTCCAGTGTTCAAGACTGCATAGAATCACTATGATGT
GACATTGTAACTGACTTCTTTTTCTATTGATTATTTTTTTCCTATTGCTC
CTACACTGTATGCTGTTGGTAATGTATGATTTTCGATCATGTGTGTGAGT
GTGGGAGTGTTCATGCCTGGACACCCATCTACGTGTGGAGGTCATAGGAG
GATATCAAGCATCCTGCCCTTTCATTCTCTGCCTTATTCTCCTGCGATGA
GGGTTCTATTTCTTTTTTTATCTCTCTAATTCACCCGCATTCGCTATTCC
CACTTCCTCTCCAATTATTTTGTTCACTATCCGCCCATTGTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_k08.g1 MSMg01no458_k08.g1 CHROMAT_FILE:
MSMg01no458_k08.g1 PHD_FILE: MSMg01no458_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:18 2005
         (234 letters)



>mm_chr4_68509860_68510493
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcattgactgccttcctcttggctgtgatttgcttttgtcttttgaatagaagcatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgcattgactgccttcctcttggctgtgatttgcttttgtcttttgaatagaagcatcct 375

                                                                       
Query: 61  caaagatgttggaatttcacctcctccagtgttcaagactgcatagaatcactatgatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 caaagatgttggaatttcacctcctccagtgttcaagactgcatagaatcactatgatgt 315

                                                                       
Query: 121 gacattgtaactgacttctttttctattgattatttttttcctattgctcctacactgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gacattgtaactgacttctttttctattgattatttttttcctattgctcctacactgta 255

                                                                 
Query: 181 tgctgttggtaatgtatgattttcgatcatgtgtgtgagtgtgggagtgttcat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgctgttggtaatgtatgattttcgatcatgtgtgtgagtgtgggagtgttcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)