BAC Information

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BAC

Clone NameMSMg01-458L15
Chromosome4 (Build37)
Map Location 99,927,774 - 99,928,102
singlet/doubletsinglet
Overlap geneRor1
Upstream geneLOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
Downstream geneUbe2u, LOC277707, LOC621573, Cachd1, LOC100039747, Raver2, Jak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458L15.T7 (MSMg01no458_l15.b1)MSMg01-458L15.TJ (MSMg01no458_l15.g1)
ACCAG544488AG544489
length736746
length of high quality
(start - end)
257 (340 - 596)329 (324 - 652)
definitionCHROMAT_FILE: MSMg01no458_l15.b1 PHD_FILE: MSMg01no458_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:24 2005CHROMAT_FILE: MSMg01no458_l15.g1 PHD_FILE: MSMg01no458_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACCCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAA
ATCCGCGGAATTCTCAACTGATTACTCTCACATAGCTTAGAAGTACTTAA
AGAAATGTTCAACATCCTTAGTCATCAGGAAAATGCAAATCAAAATGACC
CTGAGATTCACATGCTCCACTATGTTTATAGCAGTCTGATTTATAATAGT
CAGAAGCTGGGAACAACCAAGATACCCCTCAGTGGAAGAATGGATACAGA
AATTGTGGTACATTTACACAATAGAGTATTACACAGCTATTCAAAAACAA
TGACTTCATGAAATTCACAGACAAATGGATATATCTATAAAATATCATCC
TGAGTGAGGTCACCCAGACACAAAAGGACACACATGGTATGTATTCATTC
ATTCATTCATTCATTTATTCATTCAACATTAGCCTAAAAGCTCAGAAATT
TTACGACTCAACTCACAGAAGCTTAACAAGAAGGAAGACCAAAGTGTAGA
TGCTTCAATCCTACTTAGAAGTAGGAACAAAATAATCCTGGGAGTAGAGG
GAGAGAGTAACCTGGGAGGGAGAGAGAAGGGGGAGGAAAAGGGGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTNTTTTTNTTTTTTTTT
TTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
CGATATAGTGNTAGGCCGGGCGGCCGCCTGTTTCAAGACATGAGGTGACC
TATAGAAGTTTCCGCGAAATTCCACTTAATATTTGCCTTTATAGCTCAAT
AGCCAGAGCGTGGGCTCATACCCACATTAGCGGTACCTAGGGGGAGGATT
ACCCTGAATAAAGTTTGGGTGTGGCTAATAAGTCATAAAACCCAAGCCAA
TACTGAGTATCTACTCCATCTCATGTGCTTTGACCTATGGTTTGGCTTTC
TTATTCCCATGAGAGCTCACATATCTGGAACAGGACCTGTTGCCCAGAAC
AGAGTGTGAAGTATTTTGATTTTATCTCTGGGTTTCCTGTCATCTGAGTT
CCAGCCTCCTTCCTCCTAAGGATCTTGTAATAAACTCTTGAATCTGACTG
AACACGGATCCCAGCATTTGTCCAGAGTTTAGAAACACATATGCCACGTG
CACAAGGTCTCATTGGCCCTGACATTCCTACAAAACTTCCCTGTTGCAAA
GTACCATCTTTGCTAGGCATGATCCCCTAGACAGGGGCTGGGTGTTACTA
GCTGACCTCCTGCCTCAGCTTCTGTCATCTTCTTTCCATGTTCAGTCTCT
CCTCTAGCCAGGATTAATCACCTTTCTCAAATCCATCATGTCCCCAAGCA
TCCCTTTCTGTCCAGAACGTCCTCACCCCCCTGCTTCCATCACAGACATA
TCCCAGGTACAGGAAATAGCATTTGAGATATACAATCAGCACGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_l15.g1 MSMg01no458_l15.g1 CHROMAT_FILE:
MSMg01no458_l15.g1 PHD_FILE: MSMg01no458_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:24 2005
         (329 letters)



>mm_chr4_99927574_99928302
          Length = 729

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctctgggtttcctgtcatctgagttccagcctccttcctcctaaggatcttgtaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctctgggtttcctgtcatctgagttccagcctccttcctcctaaggatcttgtaataa 260

                                                                       
Query: 61  actcttgaatctgactgaacacggatcccagcatttgtccagagtttagaaacacatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcttgaatctgactgaacacggatcccagcatttgtccagagtttagaaacacatatg 320

                                                                       
Query: 121 ccacgtgcacaaggtctcattggccctgacattcctacaaaacttccctgttgcaaagta 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacgtgcgcaaggtctcattggccctgacattcctacaaaacttccctgttgcaaagta 380

                                                                       
Query: 181 ccatctttgctaggcatgatcccctagacaggggctgggtgttactagctgacctcctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatctttgctaggcatgatcccctagacaggggctgggtgttactagctgacctcctgc 440

                                                                       
Query: 241 ctcagcttctgtcatcttctttccatgttcagtctctcctctagccaggattaatcacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagcttctgtcatcttctttccatgttcagtctctcctctagccaggattaatcacct 500

                                        
Query: 301 ttctcaaatccatcatgtccccaagcatc 329
           |||||||||||||||||||||||||||||
Sbjct: 501 ttctcaaatccatcatgtccccaagcatc 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)